View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0945_low_19 (Length: 407)
Name: NF0945_low_19
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0945_low_19 |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 11755854 - 11756251
Alignment:
| Q |
1 |
aaatgcattttaaaaattccattgaaatcctaagaattgttgaagaaaaattgttatcttcagtgctattacaaaaggcatacagccttatgctcttttg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11755854 |
aaatgcattttaaaaattccattgaaatcctaagaattgttgaagaaaaattgttatcttcagtgctattacaaaaggcatacagccttatgctcttttg |
11755953 |
T |
|
| Q |
101 |
gttttcacctactttggtctctgcagctacctttttggcttgttacctcttgaaagttcctctccatgcaaataatgttttcacatttatcactactgtg |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
11755954 |
gttttcacctactttggtctctgctgctacctttttggcttgttacctcttgaaagttcctctccatgcaaataatgttttcacatttatcacaaccgtg |
11756053 |
T |
|
| Q |
201 |
cgccttgtgcaagatcctatttcaaccattggagatgttattggagtgatcattcaagcaaaggttgctttttctcgggttgtgaaatttctcgaggcac |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11756054 |
cgccttgtgcaagatcctatttcaaccataggagatgttattggagtgatcattcaagcaaaggttgctttttctcgggttgtgaaatttctcgaggcac |
11756153 |
T |
|
| Q |
301 |
ctgagcttcaaactactagtgttagaaagagctacaatgatgagaagttaaagggctcaattttaattaagtctgcagatttttcatgggagtataat |
398 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11756154 |
ctgagcttcaaactactagtgtcagaaagagctacaatgatgagaagttaaagggttcaattttaattaagtctgcagatttttcatgggagtataat |
11756251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 12094081 - 12093684
Alignment:
| Q |
1 |
aaatgcattttaaaaattccattgaaatcctaagaattgttgaagaaaaattgttatcttcagtgctattacaaaaggcatacagccttatgctcttttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
12094081 |
aaatgcattttaaaaattccattgaaatcctaagaattgttgaacaaaaattgttatcttcagtgttattacaaaaggcatacagccttattctcttttg |
12093982 |
T |
|
| Q |
101 |
gttttcacctactttggtctctgcagctacctttttggcttgttacctcttgaaagttcctctccatgcaaataatgttttcacatttatcactactgtg |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
12093981 |
gttttcacctactttggtctctgctgctacctttttggcttgttacctcttgaaagttcctctccatgcaaataatgttttcacatttatcacaaccgtg |
12093882 |
T |
|
| Q |
201 |
cgccttgtgcaagatcctatttcaaccattggagatgttattggagtgatcattcaagcaaaggttgctttttctcgggttgtgaaatttctcgaggcac |
300 |
Q |
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| T |
12093881 |
cgccttgtgcaagatcctatttcaaccattggagatgttattggagtgatcattcaagcaaaggttgctttttctcgggttgtgaaatttctcgaggcac |
12093782 |
T |
|
| Q |
301 |
ctgagcttcaaactactagtgttagaaagagctacaatgatgagaagttaaagggctcaattttaattaagtctgcagatttttcatgggagtataat |
398 |
Q |
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|||||||||||||||||||||| |||||||||| | | ||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||| |
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| T |
12093781 |
ctgagcttcaaactactagtgtcagaaagagctgctacgatgagaagttaaagggctcaataaaaatcaagtctgcagatttttcatgggaatataat |
12093684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 48 - 391
Target Start/End: Complemental strand, 11739806 - 11739463
Alignment:
| Q |
48 |
aaattgttatcttcagtgctattacaaaaggcatacagccttatgctcttttggttttcacctactttggtctctgcagctacctttttggcttgttacc |
147 |
Q |
| |
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||||| ||||||||||||||| | ||||| ||||||| | || ||||| ||||||||||| |||| ||||||| || || ||| || |||||| |
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| T |
11739806 |
aaattcttatcttcagtgctactgcaaaaagcatacaatgtcattctcttctggttttcaccgtttttgatctctgctgcgacatttagtgcatgttact |
11739707 |
T |
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| Q |
148 |
tcttgaaagttcctctccatgcaaataatgttttcacatttatcactactgtgcgccttgtgcaagatcctatttcaaccattggagatgttattggagt |
247 |
Q |
| |
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||||||| |||||| | ||||| |||||| | ||||| ||| | | || | || ||| |||||||||| ||||||||||| |||||||||||||| |
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| T |
11739706 |
tcttgaatgttcctttacatgcgaataatatattcacctttgtggcaacaatacgacttatgcaagatccaatttcaaccatccctgatgttattggagt |
11739607 |
T |
|
| Q |
248 |
gatcattcaagcaaaggttgctttttctcgggttgtgaaatttctcgaggcacctgagcttcaaactactagtgttagaaagagctacaatgatgagaag |
347 |
Q |
| |
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||||||||||||||| |||| ||||||||| ||||| |||| ||||||||||||||| | || | | | | | | ||||||| | | |||||| ||| |
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| T |
11739606 |
gatcattcaagcaaatattgcattttctcggattgtggaattcctcgaggcacctgagttgcagagttcaaatttcagaaagacttgctttgatgaaaag |
11739507 |
T |
|
| Q |
348 |
ttaaagggctcaattttaattaagtctgcagatttttcatggga |
391 |
Q |
| |
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|| || |||||||||||||| |||||| | || ||||||||||| |
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| T |
11739506 |
ttgaatggctcaattttaatcaagtcttctgacttttcatggga |
11739463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 301
Target Start/End: Original strand, 11618361 - 11618514
Alignment:
| Q |
148 |
tcttgaaagttcctctccatgcaaataatgttttcacatttatcactactgtgcgccttgtgcaagatcctatttcaaccattggagatgttattggagt |
247 |
Q |
| |
|
||||||| ||||||| |||||| ||||||||||||||| || | ||| |||||||||| |||||||| ||| ||| ||| ||| ||||||| || |
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|
| T |
11618361 |
tcttgaagattcctctgaatgcaagtaatgttttcacattggtcgcaactttgcgccttgttcaagatccaattgcaaacatcccagaagttattgcagc |
11618460 |
T |
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| Q |
248 |
gatcattcaagcaaaggttgctttttctcgggttgtgaaatttctcgaggcacc |
301 |
Q |
| |
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||||||||| || || ||||| ||| ||||| |||| || || || |||||||| |
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| T |
11618461 |
gatcattcaggcgaaagttgcatttgctcggattgttaatttccttgaggcacc |
11618514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 277
Target Start/End: Complemental strand, 11631854 - 11631742
Alignment:
| Q |
165 |
catgcaaataatgttttcacatttatcactactgtgcgccttgtgcaagatcctatttcaaccattggagatgttattggagtgatcattcaagcaaagg |
264 |
Q |
| |
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||||||| |||||||||||| ||| | | |||||||||||||| ||||| || ||| ||| ||| |||||| |||| ||||||||||| ||||| | |
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| T |
11631854 |
catgcaagtaatgttttcacttttgtggcaactgtgcgccttgttcaagagccaattacaagtattccagatgtcattgcggtgatcattcaggcaaaag |
11631755 |
T |
|
| Q |
265 |
ttgctttttctcg |
277 |
Q |
| |
|
|||| ||| |||| |
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|
| T |
11631754 |
ttgcatttgctcg |
11631742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 277
Target Start/End: Original strand, 12697 - 12842
Alignment:
| Q |
132 |
tttttggcttgttacctcttgaaagttcctctccatgcaaataatgttttcacatttatcactactgtgcgccttgtgcaagatcctatttcaaccattg |
231 |
Q |
| |
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|||||||| |||||| ||||| ||||||| | ||||||| |||||||||||||||| | | ||| || |||||| |||||||| ||||||| |||| |
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| T |
12697 |
tttttggcatgttacttcttggaagttccattgcatgcaagtaatgttttcacatttgtggcaactttgaaccttgttcaagatccaatttcaagcattc |
12796 |
T |
|
| Q |
232 |
gagatgttattggagtgatcattcaagcaaaggttgctttttctcg |
277 |
Q |
| |
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||||||||| || ||| |||||||| || ||||| ||| |||| |
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|
| T |
12797 |
cggatgttattacagcgattattcaagctaaagttgcatttgctcg |
12842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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