View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0945_low_2 (Length: 777)
Name: NF0945_low_2
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0945_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 653; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 7 - 713
Target Start/End: Complemental strand, 28439260 - 28438553
Alignment:
| Q |
7 |
tccaacaatatttcacacacacaacgttagacattaaatttcaagatatcgattgactggacaagttcatgttctgttatgtagacaattagattggagt |
106 |
Q |
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| T |
28439260 |
tccaacaatatttcacacacacaacgttagacattaaatttcaagatatcgattgactggacaagttcatgttctgttatgtagacaattagattggagt |
28439161 |
T |
|
| Q |
107 |
attatcattcctgcaaatggtacatgggctatatacttcgttaatatattttcttggcgttagctctccggtttttaggaaaagacacacaatcaaagat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28439160 |
attatcattcctgcaaatggtacatgggctatatacttcgttaatatattttcttggcgttagctctccggtttttaggaaaagacacacaatcaaagat |
28439061 |
T |
|
| Q |
207 |
aagaacggtctaatcaataatgttccatttacaaatcaaactcgtgtttttcgtatcgatttatattttggtggatgttataacacttgatcctcttatt |
306 |
Q |
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| T |
28439060 |
aagaacggtctaatcaataatgttccatttacaaatcaaactcgtgtttttcgtaacgattcatattttggtggatgttataacacttgagccacttatt |
28438961 |
T |
|
| Q |
307 |
ttttgttttgttgtgaagacaacacctgagccacttggttaatattctatttgggcgtgtaatacaatttaaactatttatcgggtttctctcaatatac |
406 |
Q |
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| T |
28438960 |
ttttgttttgttttgaagacaacacctgagccacttggttaatattctatttgggcgtgtaatacaatttaaactatttatcgggtttctctcaatatac |
28438861 |
T |
|
| Q |
407 |
gtataaacactaaaaattgttaattggtaaatattgctgtactcctccataaaaaattgaaaggctatctgaaatattgtcgggtttcactgcttttaga |
506 |
Q |
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| T |
28438860 |
gtataaacactaaaaattgttaattggtaaatattgctgtactcctccataaaaaattgaaaggctatctgaaatattgtcgggtttcactgcttttaga |
28438761 |
T |
|
| Q |
507 |
taaccttcattcagtaggttgacacctttttagggaatccactcctttgcttggtaaacaagcaacaatatatatattgctttactcgcatggaatggag |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28438760 |
taaccttcattcagtaggttgacacctttttagggaatccactcctttgcttggtaaacaagcaacaatatatatattgctttactcgcatggaatggag |
28438661 |
T |
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| Q |
607 |
ttggaaaataataaataataacttgaattttagtagaagattaagcttgaaacctgtgaggatctcat-nnnnnnnnnccaagtttgcataaagccacac |
705 |
Q |
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| T |
28438660 |
ttggaaaataataaataataacttgaattttagtagaagattaagcttgaaacctgtgaggatctcataaaaaaaaaaccaagtttgcataaagccacac |
28438561 |
T |
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| Q |
706 |
gttcttct |
713 |
Q |
| |
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|||||||| |
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| T |
28438560 |
gttcttct |
28438553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 640 - 673
Target Start/End: Original strand, 35616367 - 35616400
Alignment:
| Q |
640 |
tagaagattaagcttgaaacctgtgaggatctca |
673 |
Q |
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|||||||||||||||||| ||||||||||||||| |
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| T |
35616367 |
tagaagattaagcttgaagcctgtgaggatctca |
35616400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 536 - 579
Target Start/End: Original strand, 696996 - 697039
Alignment:
| Q |
536 |
ttagggaatccactcctttgcttggtaaacaagcaacaatatat |
579 |
Q |
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| T |
696996 |
ttagggaatccactcatttgcttggtaaataagcaacaatatat |
697039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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