View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0945_low_20 (Length: 390)
Name: NF0945_low_20
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0945_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 12 - 294
Target Start/End: Original strand, 19901260 - 19901542
Alignment:
| Q |
12 |
taatatcctttattataagtcaccattactattttttgctgtgtgcacaggcttaattaattttgcatgcttaacggcaataaagaaggttaaggagaag |
111 |
Q |
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| T |
19901260 |
taatatcctttattataagtcaccattactattttttgctgtgtgcacaggcttaattaattttgcatgcttaacggcaataaagaaggttaaggagaag |
19901359 |
T |
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| Q |
112 |
catatatatggtggtaagcttttggaagcatttatggaatatccttacattgaggttgttccctttgatgacggagaacatgatgaagaaatgaaagaga |
211 |
Q |
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| T |
19901360 |
catatatatggtggtaagcttttggaagcatttatgaaacatccttacattgaggttgttccctttgatgacggagaacatgatgaagaaatgaaagaga |
19901459 |
T |
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| Q |
212 |
aagctcggtgcaaacgagaaggaagtaagaacaaaataaatattttccgtcnnnnnnnttacttaataaggaatacgtttgtt |
294 |
Q |
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| T |
19901460 |
aagctcggtgcaaacgagaaggaagtaagaacaaaataaatattttccgtcaaaaaaattacttaataaggaatacgtttgtt |
19901542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 20082578 - 20082536
Alignment:
| Q |
171 |
tccctttgatgacggagaacatgatgaagaaatgaaagagaaa |
213 |
Q |
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| T |
20082578 |
tccctttgattacggagcacatgatgaagaaataaaagagaaa |
20082536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 20110756 - 20110711
Alignment:
| Q |
171 |
tccctttgatgacggagaacatgatgaagaaatgaaagagaaagct |
216 |
Q |
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| T |
20110756 |
tccctttgattatggagaacatgacgaagaaataaaagagaaagct |
20110711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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