View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0945_low_23 (Length: 381)

Name: NF0945_low_23
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0945_low_23
NF0945_low_23
[»] chr7 (1 HSPs)
chr7 (23-102)||(1971664-1971743)
[»] chr8 (2 HSPs)
chr8 (18-102)||(19962641-19962725)
chr8 (313-354)||(36236260-36236301)
[»] chr4 (2 HSPs)
chr4 (155-287)||(44983516-44983654)
chr4 (105-161)||(47528410-47528466)
[»] scaffold0036 (1 HSPs)
scaffold0036 (313-354)||(99219-99260)
[»] chr3 (2 HSPs)
chr3 (313-354)||(31232175-31232216)
chr3 (18-69)||(32395028-32395079)
[»] chr2 (1 HSPs)
chr2 (317-354)||(38403633-38403670)
[»] chr1 (2 HSPs)
chr1 (313-354)||(33813816-33813857)
chr1 (319-354)||(33873292-33873327)


Alignment Details
Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 1971664 - 1971743
Alignment:
Q  23 acgtactttggtgttctgaaggaagcttttgggtctgttggagctttgtttatcgcggtgagttttgtttatttttaatt 102  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1971664 acgtactttggtgttatgaaggaagcttttgggtctgttggagctttgtttatcgcggtgagttttgtttatttttaatt 1971743  T

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Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 19962641 - 19962725
Alignment:
Q  18 ccacgacgtactttggtgttctgaaggaagcttttgggtctgttggagctttgtttatcgcggtgagttttgtttatttttaatt 102  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  19962641 ccacgacgtactttggtgttatgaaggaagcttttgagtctgttggagctttgtttatcacggtgagttttgtttatttttaatt 19962725  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 36236301 - 36236260
Alignment:
Q  313 ttgataggttcatgttggttttgtagcgattgcaaatttgtg 354  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  36236301 ttgacaggttcatgttggttttgtagcgattgcaaatttgtg 36236260  T

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Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 155 - 287
Target Start/End: Complemental strand, 44983654 - 44983516
Alignment:
Q  155 tggaaattactctttgtgttatgtggaagtgcttttgaaggctgtgttagaatcaagatatatcacttttatcggttttggtcgtgttctgttatact-t 253  Q
    ||||||||||||  |||||| ||||||||||||| ||||||  ||||| ||||||| ||||||||||||||||||  ||||||||||||||||||| | |    
T  44983654 tggaaattactcagtgtgttctgtggaagtgcttatgaaggtagtgtttgaatcaaaatatatcacttttatcggcgttggtcgtgttctgttataatat 44983555  T
Q  254 taata-----ttaacgtgaaacacaatccacttattctg 287  Q
    |||||     ||||||||||||| |||||||||||||||    
T  44983554 taatatgcacttaacgtgaaacaaaatccacttattctg 44983516  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 47528410 - 47528466
Alignment:
Q  105 atttatgttaagttttctgtgctgttacatttgggctgtttgtatgattctggaaat 161  Q
    |||||||||||||||||  |||||||||||||||  | |||||||||||||| ||||    
T  47528410 atttatgttaagttttccctgctgttacatttggtttctttgtatgattctgaaaat 47528466  T

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Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 99219 - 99260
Alignment:
Q  313 ttgataggttcatgttggttttgtagcgattgcaaatttgtg 354  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  99219 ttgacaggttcatgttggttttgtagcgattgcaaatttgtg 99260  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 31232175 - 31232216
Alignment:
Q  313 ttgataggttcatgttggttttgtagcgattgcaaatttgtg 354  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  31232175 ttgacaggttcatgttggttttgtagcgattgcaaatttgtg 31232216  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 32395028 - 32395079
Alignment:
Q  18 ccacgacgtactttggtgttctgaaggaagcttttgggtctgttggagcttt 69  Q
    ||||||| |||| ||||||| ||||||||||||||||||| |||||||||||    
T  32395028 ccacgacatactctggtgttatgaaggaagcttttgggtccgttggagcttt 32395079  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 38403633 - 38403670
Alignment:
Q  317 taggttcatgttggttttgtagcgattgcaaatttgtg 354  Q
    ||||||||||||||||||||||||||||||||||||||    
T  38403633 taggttcatgttggttttgtagcgattgcaaatttgtg 38403670  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 33813816 - 33813857
Alignment:
Q  313 ttgataggttcatgttggttttgtagcgattgcaaatttgtg 354  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  33813816 ttgacaggttcatgttggttttgtagcgattgcaaatttgtg 33813857  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 354
Target Start/End: Original strand, 33873292 - 33873327
Alignment:
Q  319 ggttcatgttggttttgtagcgattgcaaatttgtg 354  Q
    ||||||||||||||||||||||||||||||||||||    
T  33873292 ggttcatgttggttttgtagcgattgcaaatttgtg 33873327  T

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