View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0945_low_29 (Length: 369)
Name: NF0945_low_29
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0945_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 98 - 294
Target Start/End: Original strand, 13346766 - 13346962
Alignment:
| Q |
98 |
ctaccaacatccctatttgtgaaattcttgtaagaatcaaataaaatcatatgaataatggtttgaactaaaattgtagccccaaaatgaagactactcc |
197 |
Q |
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| T |
13346766 |
ctaccaacatccctatttgtgaaattcttgtaagaatcaaataaaatcatatgaataatggtttgaactaaaattgtagccccaaaatgaagactacttc |
13346865 |
T |
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| Q |
198 |
aaaaaataaatgtatataagtaacaaacacacgatattctttagaatagtttgctaggtgttcattacacggctccttaccattgtactccggtgtt |
294 |
Q |
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| T |
13346866 |
aaaaaataaatgtatataagtaacgaacacacgatattctttagaatagtttgctaggtgttcattacacgactccttaccattgtactccggtgtt |
13346962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 163 - 297
Target Start/End: Original strand, 13346970 - 13347102
Alignment:
| Q |
163 |
aactaaaattgtagccccaaaatgaagactactccaaaaaataaatgtatataagtaacaaacacacgatattctttagaatagtttgctaggtgttcat |
262 |
Q |
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| T |
13346970 |
aactaaaattgtagccccaaaatgaagactactccaaaaaatagatgtatataagtaacaaacac--gatattctttagaatagtttgctaggtgttcat |
13347067 |
T |
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| Q |
263 |
tacacggctccttaccattgtactccggtgttcat |
297 |
Q |
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| T |
13347068 |
tacacggctctttaccattgtactccagtgttcat |
13347102 |
T |
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