View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0945_low_31 (Length: 356)
Name: NF0945_low_31
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0945_low_31 |
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| [»] scaffold0036 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 97 - 317
Target Start/End: Complemental strand, 3083289 - 3083070
Alignment:
| Q |
97 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca |
196 |
Q |
| |
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||||||||||||| |||| ||| |||||||| ||||||||||| ||||| ||||||||| |||||||||| |||||||||| |||||||||||| |||| |
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| T |
3083289 |
gtagccattgtttgctcagagagaatgcagttaaatagctactataaatc-tgaggtaagtaacctttaattctcaaaccaaatgaaagttcctcttgca |
3083191 |
T |
|
| Q |
197 |
taagatgtagttattccaattaaggcttgtgcacatgtatgttaactccaatagcagtctcatcattctcagtccctaaatgaataaagcagtacaccag |
296 |
Q |
| |
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|||||||||| | |||||||||| | |||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||| |||||| |
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| T |
3083190 |
taagatgtagctgttccaattaaagtttgtgcacatgtatgttaactccaatagcagtttcctcattctccacccctaaatgaataaagcagaacaccaa |
3083091 |
T |
|
| Q |
297 |
aaattggaaatccttgtaagt |
317 |
Q |
| |
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|||||||| |||||||||||| |
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| T |
3083090 |
aaattggacatccttgtaagt |
3083070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 97 - 353
Target Start/End: Complemental strand, 38404072 - 38403829
Alignment:
| Q |
97 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca |
196 |
Q |
| |
|
||||||||||||| |||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||| || | |
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| T |
38404072 |
gtagccattgtttgctcagagagaatgcagtcaaatagctacttaaaatcctgaggtaagcaacctttaatgctcaacctaagtgaaagtagctgcaact |
38403973 |
T |
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| Q |
197 |
taagatgtagttattccaattaaggcttgtgcacatgtatgttaactccaatagcagtctcatcattctcagtccctaaatgaataaagcagtacaccag |
296 |
Q |
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||||||||||||||| ||||||| | ||| ||||||||||||| |||||||| |||||||||| ||||||||||||||||| |||||| |
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| T |
38403972 |
taagatgtagttattacaattaaagtttg----------tgttaactccaatggcagtctcctcattctcagcccctaaatgaataaagc---acaccaa |
38403886 |
T |
|
| Q |
297 |
aaattggaaatccttgtaagtnnnnnnnctgctgccttaaataccaaaagcaaattc |
353 |
Q |
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|||||||| ||| |||||||| ||||||||||| | |||| |||||||||| |
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| T |
38403885 |
aaattggacatcattgtaagtaataaacctgctgccttacaaaccagaagcaaattc |
38403829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 38404214 - 38404139
Alignment:
| Q |
16 |
atcaataacaataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt |
91 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||| ||| |||||||| |
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| T |
38404214 |
atcaataacaataatcacttttcaatttcaatcaattcaaacaaagaaagaaacaaaaaaattctcaagttaattt |
38404139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 97 - 317
Target Start/End: Complemental strand, 40910038 - 40909819
Alignment:
| Q |
97 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca |
196 |
Q |
| |
|
||||||||||||| |||| ||| |||||||| ||||||||||| ||||| ||||||||| |||||||||| |||||||||| |||||||||||| |||| |
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| T |
40910038 |
gtagccattgtttgctcagagagaatgcagttaaatagctactataaatc-tgaggtaagtaacctttaattctcaaaccaaatgaaagttcctcttgca |
40909940 |
T |
|
| Q |
197 |
taagatgtagttattccaattaaggcttgtgcacatgtatgttaactccaatagcagtctcatcattctcagtccctaaatgaataaagcagtacaccag |
296 |
Q |
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|||||||||| | |||||||||| | |||||||||||||||||||||||||||||||| || | |||||| | ||||||||||||||||||| |||||| |
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| T |
40909939 |
taagatgtagctgttccaattaaagtttgtgcacatgtatgttaactccaatagcagtttccttattctccgcccctaaatgaataaagcagaacaccaa |
40909840 |
T |
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| Q |
297 |
aaattggaaatccttgtaagt |
317 |
Q |
| |
|
|||||||| |||||||||||| |
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| T |
40909839 |
aaattggacatccttgtaagt |
40909819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 33814188 - 33814113
Alignment:
| Q |
16 |
atcaataacaataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt |
91 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
33814188 |
atcaataacaataatcacttttcaatttcaatcaattcaaacaaaggaagaaacacaaaaattatcaagttaattt |
33814113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 33873658 - 33873583
Alignment:
| Q |
16 |
atcaataacaataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt |
91 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
33873658 |
atcaataacaataatcacttttcaatttcaatcaattcaaacaaaggaagaaacacaaaaattatcaagttaattt |
33873583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 354
Target Start/End: Complemental strand, 33814092 - 33814012
Alignment:
| Q |
274 |
aaatgaataaagcagtacaccagaaattggaaatccttgtaagtnnnnnnnctgctgccttaaataccaaaagcaaattca |
354 |
Q |
| |
|
||||||||||||||| |||||| |||||| | |||||||||||| ||||||||||| |||||| ||||||||||| |
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| T |
33814092 |
aaatgaataaagcagcacaccaaaaattgaacatccttgtaagtaacaaacctgctgccttacataccagaagcaaattca |
33814012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 354
Target Start/End: Complemental strand, 33873562 - 33873482
Alignment:
| Q |
274 |
aaatgaataaagcagtacaccagaaattggaaatccttgtaagtnnnnnnnctgctgccttaaataccaaaagcaaattca |
354 |
Q |
| |
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||||||||||||||| |||||| |||||| | |||||||||||| ||||||||||| |||||| ||||||||||| |
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| T |
33873562 |
aaatgaataaagcagcacaccaaaaattgaacatccttgtaagtaacaaacctgctgccttacataccagaagcaaattca |
33873482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 97 - 353
Target Start/End: Complemental strand, 99662 - 99419
Alignment:
| Q |
97 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca |
196 |
Q |
| |
|
||||||||||||| |||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||| || | |
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| T |
99662 |
gtagccattgtttgctcagagagaatgcagtcaaatagctacttaaaatcctgaggtaagcaacctttaatgctcaacctaagtgaaagtagctgcaact |
99563 |
T |
|
| Q |
197 |
taagatgtagttattccaattaaggcttgtgcacatgtatgttaactccaatagcagtctcatcattctcagtccctaaatgaataaagcagtacaccag |
296 |
Q |
| |
|
||||||||||||||| ||||||| | ||| ||||||||||||| |||||||| |||||||||| ||||||||||||||||| |||||| |
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| T |
99562 |
taagatgtagttattacaattaaagtttg----------tgttaactccaatggcagtctcctcattctcagcccctaaatgaataaagc---acaccaa |
99476 |
T |
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| Q |
297 |
aaattggaaatccttgtaagtnnnnnnnctgctgccttaaataccaaaagcaaattc |
353 |
Q |
| |
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|||||||| |||||||||||| ||||||||||| | |||| |||||||||| |
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| T |
99475 |
aaattggacatccttgtaagtaataaacctgctgccttacaaaccagaagcaaattc |
99419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 99804 - 99729
Alignment:
| Q |
16 |
atcaataacaataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt |
91 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||| ||| |||||||| |
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| T |
99804 |
atcaataacaataatcacttttcaatttcaatcaattcaaacaaagaaagaaacaaaaaaattctcaagttaattt |
99729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 24469255 - 24469303
Alignment:
| Q |
97 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaat |
145 |
Q |
| |
|
||||||||||||| |||| ||| |||| |||||||||||||||||||| |
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|
| T |
24469255 |
gtagccattgtttgctcagagagaatgtggtcaaatagctacttaaaat |
24469303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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