View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0945_low_33 (Length: 335)

Name: NF0945_low_33
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0945_low_33
NF0945_low_33
[»] chr5 (5 HSPs)
chr5 (45-305)||(29954298-29954559)
chr5 (101-295)||(22708208-22708405)
chr5 (211-250)||(17589550-17589589)
chr5 (98-144)||(12567190-12567236)
chr5 (201-250)||(32560638-32560687)
[»] chr4 (7 HSPs)
chr4 (49-295)||(7690326-7690573)
chr4 (101-295)||(1290425-1290624)
chr4 (51-295)||(51267553-51267793)
chr4 (58-126)||(7784990-7785057)
chr4 (209-255)||(7784902-7784948)
chr4 (168-250)||(21121837-21121918)
chr4 (204-250)||(51702234-51702280)
[»] chr2 (6 HSPs)
chr2 (45-295)||(31055628-31055878)
chr2 (51-295)||(25221828-25222076)
chr2 (50-283)||(16267295-16267528)
chr2 (169-250)||(35658371-35658453)
chr2 (210-250)||(19182355-19182395)
chr2 (202-250)||(38002210-38002258)
[»] chr6 (4 HSPs)
chr6 (51-287)||(1717367-1717604)
chr6 (202-248)||(6257522-6257568)
chr6 (203-255)||(31946476-31946528)
chr6 (197-255)||(3707189-3707247)
[»] chr3 (3 HSPs)
chr3 (97-226)||(6042908-6043040)
chr3 (100-185)||(35695367-35695453)
chr3 (95-139)||(41907343-41907387)
[»] chr1 (7 HSPs)
chr1 (96-250)||(26924824-26924978)
chr1 (94-144)||(31481277-31481327)
chr1 (211-250)||(30052438-30052477)
chr1 (92-149)||(18650145-18650201)
chr1 (197-250)||(23043648-23043701)
chr1 (210-250)||(18650264-18650304)
chr1 (104-140)||(30052330-30052366)
[»] scaffold0178 (1 HSPs)
scaffold0178 (202-251)||(9324-9373)
[»] chr7 (2 HSPs)
chr7 (197-250)||(27900038-27900091)
chr7 (107-147)||(22543197-22543237)
[»] chr8 (2 HSPs)
chr8 (210-250)||(10659016-10659056)
chr8 (203-255)||(41566476-41566527)


Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 45 - 305
Target Start/End: Complemental strand, 29954559 - 29954298
Alignment:
Q  45 atagcaaaaatagaaataaaataacataaaagaacaaa-ggtaaagagctggggggacattggacctgacccagaaataacccaaacggaaatacatcgt 143  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29954559 atagcaaaaatagaaataaaataacataaaagaacaaaaggtaaagagctggggggacattgcacctgacccagaaataacccaaacggaaatacatcgt 29954460  T
Q  144 gtaaaacagaaaaatgaaactaccctaatcaatcctaacaaactaactctcaccacgagcgcaatccagcgaacccgcgtacggattcgaaaccaagtta 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29954459 gtaaaacagaaaaatgaaactaccctaatcaatcctaacaaactaactctcaccatgagcgcaatccagcgaacccgcgtacggattcgaaaccaagtta 29954360  T
Q  244 caaaaaacatgatgagagagggttagtagaataaaagagggttttaagattgtcctttaata 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29954359 caaaaaacatgatgagagagggttagtagaataaaagagggttttaagattgtcctttaata 29954298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 101 - 295
Target Start/End: Complemental strand, 22708405 - 22708208
Alignment:
Q  101 cattggacctgacccagaaataacccaaacggaaatacatcgtg-taaaacagaaaaatgaaactaccctaatcaatcctaacaaa-ctaactctcacca 198  Q
    ||||||| ||| |||||||||||||||| |||| |||||||||| ||||||| ||||| ||||| | | |||||||| |||||||| | |||| |||  |    
T  22708405 cattggatctggcccagaaataacccaatcggagatacatcgtggtaaaacataaaaa-gaaacgatcataatcaattctaacaaaacaaactttcatta 22708307  T
Q  199 cgagcgcaatccagcgaacccgcgtacggattcgaaaccaagttacaaaa--aacatgatgagagagggttagtagaataaaagagggttttaagattg 295  Q
    ||||||||| |||||||||||||||||| | || ||||||||||||||||  ||||||| |||||||    | ||| ||||||||||||||||| ||||    
T  22708306 cgagcgcaacccagcgaacccgcgtacgaaatcaaaaccaagttacaaaaataacatgacgagagagcaacattaggataaaagagggttttaaaattg 22708208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 17589550 - 17589589
Alignment:
Q  211 agcgaacccgcgtacggattcgaaaccaagttacaaaaaa 250  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  17589550 agcgaacccgcgtacgggtgcgaaaccaagttacaaaaaa 17589589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 12567236 - 12567190
Alignment:
Q  98 ggacattggacctgacccagaaataacccaaacggaaatacatcgtg 144  Q
    ||||||||||||||| |||| ||||||| ||||||||||||| ||||    
T  12567236 ggacattggacctgatccaggaataaccgaaacggaaatacaacgtg 12567190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 32560687 - 32560638
Alignment:
Q  201 agcgcaatccagcgaacccgcgtacggattcgaaaccaagttacaaaaaa 250  Q
    |||||||||||||||||||||||||||   ||||||||  ||||||||||    
T  32560687 agcgcaatccagcgaacccgcgtacgggcgcgaaaccagattacaaaaaa 32560638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 49 - 295
Target Start/End: Original strand, 7690326 - 7690573
Alignment:
Q  49 caaaaatagaaataaaataacataaaagaacaaaggtaaagagctggggggacattggacctgacccagaaataacccaaacggaaatacatcgtgtaaa 148  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  7690326 caaaaaaagaaataaaataacataaaagaacaaaggtacagagctggggggacattggacctgacccagaaataacccaaacggagatacaacgtgtaaa 7690425  T
Q  149 acagaaaaatgaaactaccctaatcaatcctaacaaactaactctcaccacgagcgcaatccagcgaacccgcgtacggattcgaaaccaagtt-acaaa 247  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| |||||| ||||||||||||||||||||||| |||||    
T  7690426 acagaaaaatgaaactaccctaatcaatcctaacaaacgaactctcaccacgggcgcaacccaacgaaccagcgtacggattcgaaaccaagttaacaaa 7690525  T
Q  248 aaacatgatgagagagggttagtagaataaaagagggttttaagattg 295  Q
    ||| |||||||||||||||  |||||||||||||||||||||||||||    
T  7690526 aaagatgatgagagagggtcggtagaataaaagagggttttaagattg 7690573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 101 - 295
Target Start/End: Original strand, 1290425 - 1290624
Alignment:
Q  101 cattggacctgacccagaaataacccaaacggaaatacatcgtg-taaaacagaaaaatgaaactaccctaatcaatcctaacaaa-ctaactctcacca 198  Q
    |||||||||||||||||||||||||||| |||| |||||| ||| ||||||| ||||| ||||| |  |||||||||||||||||| | |||| ||| ||    
T  1290425 cattggacctgacccagaaataacccaatcggagatacattgtggtaaaacataaaaa-gaaacaattctaatcaatcctaacaaaacaaactttcatca 1290523  T
Q  199 cgagcgcaatccagcgaacccgcgtacggattcgaaaccaagttacaaaaaa----catgatgagagagggttagtagaataaaagagggttttaagatt 294  Q
    |||| |||| |||||||||| ||||||||| |||||||||||||||||||||    ||||| |||||||    | ||| ||||||||||||||||| |||    
T  1290524 cgagagcaacccagcgaacctgcgtacggaatcgaaaccaagttacaaaaaaaaaacatgacgagagagcaacattaggataaaagagggttttaaaatt 1290623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 295
Target Start/End: Complemental strand, 51267793 - 51267553
Alignment:
Q  51 aaaatagaaataaaataacataaaagaacaaaggtaaagagctgggggga----cattggacctgacccagaaataacccaaacggaaatacatcgtg-t 145  Q
    |||| ||||||| ||||||||||||||| ||||||| |||| |||||||     |||| |||||||||||||||||||||||  || ||||||||||| |    
T  51267793 aaaagagaaatataataacataaaagaaaaaaggtacagagttgggggggggggcattagacctgacccagaaataacccaattgggaatacatcgtgat 51267694  T
Q  146 aaaacagaaaaatgaaactaccctaatcaatcctaacaaactaactctcaccacgagcgcaatccagcgaacccgcgtacggattcgaaaccaagttaca 245  Q
    ||||||||||       | |||||||||||||||||||||| |||| ||| |||| |||||| |||||||| | | |||||   ||||||||||||||||    
T  51267693 aaaacagaaa-------cgaccctaatcaatcctaacaaacgaactatcatcacgggcgcaacccagcgaaactgtgtacg--ctcgaaaccaagttaca 51267603  T
Q  246 aaaaacatgatgagagagggttagtagaataaaagagggttttaagattg 295  Q
    ||||| ||||  |||| | || | ||| |||||| |||||||| ||||||    
T  51267602 aaaaagatgacaagagggcgtcaataggataaaaaagggtttttagattg 51267553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 7785057 - 7784990
Alignment:
Q  58 aaataaaataacataaaagaacaaaggtaaagagctggggggacattggacctgacccagaaataaccc 126  Q
    ||||| |||||||||||| || ||||||| || | |||||||||||| |||||||||||||||||||||    
T  7785057 aaatagaataacataaaataa-aaaggtacagcgatggggggacattagacctgacccagaaataaccc 7784990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 7784948 - 7784902
Alignment:
Q  209 ccagcgaacccgcgtacggattcgaaaccaagttacaaaaaacatga 255  Q
    ||||||||||||||||||   ||||||||||||||||||||| ||||    
T  7784948 ccagcgaacccgcgtacgagctcgaaaccaagttacaaaaaagatga 7784902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 21121918 - 21121837
Alignment:
Q  168 ctaatcaatcctaacaaactaactctcaccacgagcgcaatccagcgaacccgcgtacggattcgaaaccaagttacaaaaaa 250  Q
    |||||| ||||||||||| |||  || | ||| ||||||| ||||||||||||| ||||| | ||| ||||||||||||||||    
T  21121918 ctaatctatcctaacaaaataaa-ctaatcactagcgcaacccagcgaacccgcatacgggtgcgagaccaagttacaaaaaa 21121837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 51702280 - 51702234
Alignment:
Q  204 gcaatccagcgaacccgcgtacggattcgaaaccaagttacaaaaaa 250  Q
    |||||||||||||||| |||| |||||||||||| | ||||||||||    
T  51702280 gcaatccagcgaacccacgtatggattcgaaaccgaattacaaaaaa 51702234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 45 - 295
Target Start/End: Complemental strand, 31055878 - 31055628
Alignment:
Q  45 atagcaaaaatagaaataaaataacataaaagaacaaaggtaaagagctggggggacattggacctgacccagaaataacccaaacggaaatacatcgtg 144  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||     
T  31055878 atagcaaaaatagaaataaattaacataaaagaacaaaggtacagagctgggggaacattggacctgacccaaaaataacccaaacggagatacatcgtt 31055779  T
Q  145 taaaacagaaaaatgaaactaccctaatcaatcctaacaaactaactctcaccacgagcgcaatccagcgaacccgcgtacggattcgaaaccaagttac 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||    
T  31055778 taaaacaaaaaaatgaaactaccctaatcaatcctaacaaacgaactctcaccacgagcgcaacccaacgaaccagcgtacggattcgaaaccaagttac 31055679  T
Q  245 aaaaaacatgatgagagagggttagtagaataaaagagggttttaagattg 295  Q
    |||||| ||||||| ||||||  ||||||||||||||||||||||||||||    
T  31055678 aaaaaagatgatgaaagagggccagtagaataaaagagggttttaagattg 31055628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 51 - 295
Target Start/End: Complemental strand, 25222076 - 25221828
Alignment:
Q  51 aaaatagaaataaaataacataaaagaacaaaggtaaagagctggggggacattggacctgacccagaaataacccaaacggaaatacatcgtg---taa 147  Q
    |||| ||||||||||||||||||||||| | ||||| |||||| |||||||||| |||||||||| ||||||||||||| ||  ||||||||||   |||    
T  25222076 aaaagagaaataaaataacataaaagaaaagaggtagagagcttgggggacattagacctgacccggaaataacccaaatggggatacatcgtgatataa 25221977  T
Q  148 aacagaaaaatgaaactaccctaatcaatcctaac-aaactaactctcaccacgagcgcaatccagcgaacccgcgtacggattcgaaaccaagttacaa 246  Q
     | | ||||| ||||| |||||||||||||||||| |||| |||||||| ||   |||||| ||||||||||||||||||||||||||||||||||||||    
T  25221976 tagaaaaaaaagaaacgaccctaatcaatcctaacaaaacgaactctcatcataggcgcaacccagcgaacccgcgtacggattcgaaaccaagttacaa 25221877  T
Q  247 aaaacatgatgagagagggttagtagaataaaagagggttttaagattg 295  Q
    |||| | || ||||||| || ||||| ||| || | |||||| ||||||    
T  25221876 aaaagacgacgagagagcgtcagtaggatacaaaatggtttttagattg 25221828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 50 - 283
Target Start/End: Complemental strand, 16267528 - 16267295
Alignment:
Q  50 aaaaatagaaataaaataacataaaagaacaaaggtaaagagctggggggacattggacctgacccagaaataacccaaacggaaatacatcgtg-taaa 148  Q
    ||||| ||||||||| ||||||||||||| ||||||| ||||||| ||| ||||||||| |||| |||||||||| ||| ||   ||||||| || ||||    
T  16267528 aaaaagagaaataaa-taacataaaagaaaaaaggtacagagctgaggg-acattggacttgacacagaaataactcaaccgaggatacatcatgataaa 16267431  T
Q  149 acagaaaaatgaaactaccctaatcaatcctaacaaact-aactctcaccacgagcgcaatccagcgaacccgcgtacggattcgaaaccaagttacaaa 247  Q
    |||| |||| ||||| |||||||| |||||||||||| | |||||||| |||| | ||||||||| ||| ||||||||||   |||||  ||||||||||    
T  16267430 acagtaaaaagaaacgaccctaataaatcctaacaaaatgaactctcatcacgggtgcaatccagtgaatccgcgtacgggcacgaaattaagttacaaa 16267331  T
Q  248 aaacatgatgagagagggttagtagaataaaagagg 283  Q
    ||| |||| ||| |||||| ||||| || |||||||    
T  16267330 aaagatgacgagtgagggtcagtaggatgaaagagg 16267295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 35658453 - 35658371
Alignment:
Q  169 taatcaatcctaa-caaactaactctcaccacgagcgcaatccagcgaacccgcgtacggattcgaaaccaagttacaaaaaa 250  Q
    ||||||||||||| ||||| ||| |||  ||| ||||||| | ||||||||||||||||||  ||||||||||||||||||||    
T  35658453 taatcaatcctaatcaaaccaacactcctcacaagcgcaacctagcgaacccgcgtacggacgcgaaaccaagttacaaaaaa 35658371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 19182395 - 19182355
Alignment:
Q  210 cagcgaacccgcgtacggattcgaaaccaagttacaaaaaa 250  Q
    |||| ||||||||||||| | ||||||||||||||||||||    
T  19182395 cagcaaacccgcgtacgggtgcgaaaccaagttacaaaaaa 19182355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 38002258 - 38002210
Alignment:
Q  202 gcgcaatccagcgaacccgcgtacggattcgaaaccaagttacaaaaaa 250  Q
    |||||| ||||| |||||||||||||   ||||||||||||||||||||    
T  38002258 gcgcaacccagcaaacccgcgtacgggcgcgaaaccaagttacaaaaaa 38002210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 51 - 287
Target Start/End: Original strand, 1717367 - 1717604
Alignment:
Q  51 aaaatagaaataaaataacataaaagaacaaaggtaaagagctggggggacattggacctgacccagaaataacccaaacggaaatacatcgtg-taaaa 149  Q
    |||| ||||||||||||||||||||||| ||||||| |||||| ||||| ||| || |||||||||||||||||||||| || ||||||||||| |||||    
T  1717367 aaaagagaaataaaataacataaaagaaaaaaggtacagagctaggggg-catcgggcctgacccagaaataacccaaaagggaatacatcgtgataaaa 1717465  T
Q  150 cagaaaaatgaaactaccctaatcaatcctaacaaa-ctaactctcaccacgagcgcaatccagcgaacccgcgtacggattcgaaaccaagttacaaaa 248  Q
    | | |||| ||||||||||||| ||||||||||||| | |||||||| |||   ||||| ||||||| |||||||||||| |||||||||||||||||||    
T  1717466 ccgtaaaaagaaactaccctaaacaatcctaacaaaacgaactctcatcacagacgcaacccagcgatcccgcgtacggactcgaaaccaagttacaaaa 1717565  T
Q  249 aacatgatgagagagggttagtagaataaaagagggttt 287  Q
    || |||| || |||| || ||||| |||| || ||||||    
T  1717566 aatatgacgaaagagtgtcagtaggataagagcgggttt 1717604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 6257568 - 6257522
Alignment:
Q  202 gcgcaatccagcgaacccgcgtacggattcgaaaccaagttacaaaa 248  Q
    |||||| ||||||||||||||||||| | ||||||||||||||||||    
T  6257568 gcgcaacccagcgaacccgcgtacgggtgcgaaaccaagttacaaaa 6257522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 31946528 - 31946476
Alignment:
Q  203 cgcaatccagcgaacccgcgtacggattcgaaaccaagttacaaaaaacatga 255  Q
    ||||| |||||||||||||||||||   |||||||||||||||||||| ||||    
T  31946528 cgcaacccagcgaacccgcgtacgggcgcgaaaccaagttacaaaaaatatga 31946476  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 3707189 - 3707247
Alignment:
Q  197 cacgagcgcaatccagcgaacccgcgtacggattcgaaaccaagttacaaaaaacatga 255  Q
    ||||||||||| ||||| ||||| | ||||||| ||||||| |||||||||||| ||||    
T  3707189 cacgagcgcaacccagcaaacccacatacggatgcgaaaccgagttacaaaaaagatga 3707247  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 226
Target Start/End: Original strand, 6042908 - 6043040
Alignment:
Q  97 gggacattggacctgacccagaaataacccaaacggaaatacatcgtg-taaaacagaaaaatgaaactaccctaatcaatcctaacaaa-ctaactctc 194  Q
    |||||||| ||||||||||||| | |||||||||||| ||||| |||| ||||| |||  |   || | ||||||||||||||||||||| | ||| |||    
T  6042908 gggacattagacctgacccagatacaacccaaacggagatacaacgtgataaaatagaccatgcaatcaaccctaatcaatcctaacaaaacaaacactc 6043007  T
Q  195 ac-cacgagcgcaatccagcgaacccgcgtacg 226  Q
    || |||| |||||||||||||||||||| ||||    
T  6043008 acacacgggcgcaatccagcgaacccgcatacg 6043040  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 35695453 - 35695367
Alignment:
Q  100 acattggacctgacccagaaataacccaaacggaaatacatcgtg-taaaacagaaaaatgaaactaccctaatcaatcctaacaaa 185  Q
    ||||| ||||||||||| ||  |||||||  |  ||||||||||| |||||||  ||| |||||| |||||||||||||||||||||    
T  35695453 acattagacctgacccaaaatcaacccaatggagaatacatcgtgataaaacattaaagtgaaacaaccctaatcaatcctaacaaa 35695367  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 41907387 - 41907343
Alignment:
Q  95 gggggacattggacctgacccagaaataacccaaacggaaataca 139  Q
    |||||||||  |||||||||||| ||||||||||||| |||||||    
T  41907387 gggggacatcagacctgacccaggaataacccaaacgaaaataca 41907343  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 250
Target Start/End: Original strand, 26924824 - 26924978
Alignment:
Q  96 ggggacattggacctgacccagaaataacccaaacggaaatacatcgtg-taaaacagaaaaatgaaactaccctaatcaatcctaacaaactaactctc 194  Q
    |||||||||  ||||||| || |||||||||||| | |||||||||||| |||| |||   |||| | |||| |||||| || |||||||| |  | ||     
T  26924824 ggggacattaaacctgactcaaaaataacccaaatgaaaatacatcgtgataaatcagtccaatggatctactctaatctattctaacaaaatt-cacta 26924922  T
Q  195 accacgagcgcaatccagcgaacccgcgtacggattcgaaaccaagttacaaaaaa 250  Q
    | ||| ||||||||||||| ||||||||||||||  ||||||||| ||||||||||    
T  26924923 atcacaagcgcaatccagcaaacccgcgtacggacacgaaaccaaattacaaaaaa 26924978  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 31481277 - 31481327
Alignment:
Q  94 ggggggacattggacctgacccagaaataacccaaacggaaatacatcgtg 144  Q
    ||||||||||| |||||||||||| ||||||||| ||||| ||||||||||    
T  31481277 ggggggacattagacctgacccaggaataacccagacggagatacatcgtg 31481327  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 30052438 - 30052477
Alignment:
Q  211 agcgaacccgcgtacggattcgaaaccaagttacaaaaaa 250  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  30052438 agcgaacccgcgtacgaatgcgaaaccaagttacaaaaaa 30052477  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 18650145 - 18650201
Alignment:
Q  92 ctggggggacattggacctgacccagaaataacccaaacggaaatacatcgtgtaaaa 149  Q
    |||||||||||| ||||||||||| | || ||| ||||||||||||||||||| ||||    
T  18650145 ctggggggacataggacctgacccgggaa-aactcaaacggaaatacatcgtgaaaaa 18650201  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 23043701 - 23043648
Alignment:
Q  197 cacgagcgcaatccagcgaacccgcgtacggattcgaaaccaagttacaaaaaa 250  Q
    ||||||||||| ||||||||||||| |||||   |||||| |||||||||||||    
T  23043701 cacgagcgcaacccagcgaacccgcatacgggcacgaaactaagttacaaaaaa 23043648  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 18650264 - 18650304
Alignment:
Q  210 cagcgaacccgcgtacggattcgaaaccaagttacaaaaaa 250  Q
    ||||||||||||||||||   ||||||||||||||||||||    
T  18650264 cagcgaacccgcgtacgggcgcgaaaccaagttacaaaaaa 18650304  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 30052330 - 30052366
Alignment:
Q  104 tggacctgacccagaaataacccaaacggaaatacat 140  Q
    |||||||||||||| |||||||||||||| |||||||    
T  30052330 tggacctgacccaggaataacccaaacgggaatacat 30052366  T

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Target: scaffold0178 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 9324 - 9373
Alignment:
Q  202 gcgcaatccagcgaacccgcgtacggattcgaaaccaagttacaaaaaac 251  Q
    |||||| | ||||||||||||||||| | |||||||||||||||||||||    
T  9324 gcgcaacctagcgaacccgcgtacgggtgcgaaaccaagttacaaaaaac 9373  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 27900038 - 27900091
Alignment:
Q  197 cacgagcgcaatccagcgaacccgcgtacggattcgaaaccaagttacaaaaaa 250  Q
    |||| |||||||||||| |||||||||||||   ||||||||||||||||||||    
T  27900038 cacgggcgcaatccagcaaacccgcgtacgggagcgaaaccaagttacaaaaaa 27900091  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 22543237 - 22543197
Alignment:
Q  107 acctgacccagaaataacccaaacggaaatacatcgtgtaa 147  Q
    ||||||||||| |||||||||||||  ||||||||||||||    
T  22543237 acctgacccaggaataacccaaacgagaatacatcgtgtaa 22543197  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 10659016 - 10659056
Alignment:
Q  210 cagcgaacccgcgtacggattcgaaaccaagttacaaaaaa 250  Q
    |||||||||||||||||| |||||||||| |||||||||||    
T  10659016 cagcgaacccgcgtacgggttcgaaaccaggttacaaaaaa 10659056  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 41566527 - 41566476
Alignment:
Q  203 cgcaatccagcgaacccgcgtacggattcgaaaccaagttacaaaaaacatga 255  Q
    |||||||||||||||||||||||||   |||||||||||||||||||| ||||    
T  41566527 cgcaatccagcgaacccgcgtacgg-cgcgaaaccaagttacaaaaaatatga 41566476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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