View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0945_low_39 (Length: 321)
Name: NF0945_low_39
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0945_low_39 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold1211 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 97 - 321
Target Start/End: Original strand, 26376767 - 26376992
Alignment:
| Q |
97 |
gattttctgttgttagatcatcaattgattttgtttgctcatccacctacaggtagagcattggctattttcagatcaaaagatgcagctgcaaacgcaa |
196 |
Q |
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| T |
26376767 |
gattttctgttgttagatcatcaattgattttgtttgctcatccacctacaggtagagcattggctattttcagatcaaaagatgcaggtgcaaacgcaa |
26376866 |
T |
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| Q |
197 |
tatctgagttgaacaggagatgccttattcttgaagacgggaggtatttcatttatcactttc-ttttctcttctgctttgttattctgttccgctccag |
295 |
Q |
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| T |
26376867 |
tatctgagttgaacaggagatgccttattcttgaagacgggaggtatttcatttatcgctttctttttctcttctgctttgttattctgttccgctccag |
26376966 |
T |
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| Q |
296 |
aacttgaataacatccaacacacctc |
321 |
Q |
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| T |
26376967 |
aacttgaataacatccaacacacctc |
26376992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1211 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: scaffold1211
Description:
Target: scaffold1211; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 98 - 309
Target Start/End: Original strand, 735 - 940
Alignment:
| Q |
98 |
attttctgttgttagatcatcaattgattttgtttgctcatccacctacaggtagagcattggctattttcagatcaaaagatgcagctgcaaacgcaat |
197 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| ||| ||||| |
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| T |
735 |
attttctgttgttagatcatcaactgattttgtttgctcatctaccgacaggtagagcattggttattttcagatcaaaagatgcagctgaaaatgcaat |
834 |
T |
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| Q |
198 |
atctgagttgaacaggagatgccttattcttgaagacgggaggtatttcatttatcacttt-cttttctcttctgctttgttattctgttccgctccaga |
296 |
Q |
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| T |
835 |
atctgagttgaccagcagatgccttgttcttga-------aggtatttcatttactgctttgtttttctcttctactttgttattctgttctgttccaga |
927 |
T |
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| Q |
297 |
acttgaataacat |
309 |
Q |
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| T |
928 |
acttgcataacat |
940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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