View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0945_low_4 (Length: 708)
Name: NF0945_low_4
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0945_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 10 - 488
Target Start/End: Original strand, 26491666 - 26492143
Alignment:
| Q |
10 |
aataatattacaccaaaactatatacattgtcctttacttcttctgctgaagttttttcgtaaccgttctttgtatcaactttgttagtgcagaaactaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
26491666 |
aataatattacaccaaaactatatacattgtcctttacttcttctgctgaagttttttcgtaacggttctttgtatcaactttgtcggtgcagaaactaa |
26491765 |
T |
|
| Q |
110 |
ggtctgatattttagcagcataatcttcagtgaggtatatagaagaagataacagatttctgtgggaaatgggtggtgtgagttgatgcatgtggtctag |
209 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
26491766 |
ggtctgatattttagcagcataatcttcagttaggtatatagaagaagataacagatttctgtgggaaatgggtggtgtgagattatgcatgtggtctag |
26491865 |
T |
|
| Q |
210 |
acagtaagctattcccatagctatcctctttctcattccccagtctagttcttctgcttctctaactgcaatacatacatgaatggtgtcaactcaaaac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||| ||||| |
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| T |
26491866 |
acagtaagctattcccatagctatcctctttctcattccccagtctagctcttctgcttctctaactgcaatatatacatgaatggtg-caacttaaaac |
26491964 |
T |
|
| Q |
310 |
aatatctaaaagcttagtaaaatttacataatcattttcaattagaattaaatatgtttttcttccctaaaaatatatcgctttttgattttggtccttg |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26491965 |
aatatctaaaagcttagtaaaatttacataatcattttcaattagaattaaatatgtttttgttccctaaaaatatatcgctttttgattttggtccttg |
26492064 |
T |
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| Q |
410 |
ttattttattttagtccccgtnnnnnnnctcatgttgaaatttgtcattgtaatacgtgtgtaattgcaaatcctgcaa |
488 |
Q |
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| T |
26492065 |
ttattttattttagtccccgtaaaaaaattcatgttgaaatttgtcattgtaatacgtgtgtaattgcaaatcctgcaa |
26492143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 491 - 679
Target Start/End: Original strand, 26492309 - 26492496
Alignment:
| Q |
491 |
ctgcaactaaattgtgaaacataacaggacttactatgtagatgctcaaacagcgttccattcggagcatactcaaaaaccatcatccttgtgaatggct |
590 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26492309 |
ctgcaactaaattgtgaa-cataacaggacttactatgtagatgctcaaacagcgttccattcggagcatactcaaaaaccatcatccttgtgaatggct |
26492407 |
T |
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| Q |
591 |
tattctcttcacaataaccaataagattcacaaaattcttgtggttcaaccttgataacatctcaatctgaaagacaaaaagtaaaaac |
679 |
Q |
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| T |
26492408 |
tattctcttcacaataaccaataagattcacaaaattcttgtggttcaaccttgataacatctcaatctgaaagacaaaaagtaaaaac |
26492496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 526 - 648
Target Start/End: Original strand, 32067026 - 32067148
Alignment:
| Q |
526 |
atgtagatgctcaaacagcgttccattcggagcatactcaaaaaccatcatccttgtgaatggcttattctcttcacaataaccaataagattcacaaaa |
625 |
Q |
| |
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||||| ||| ||||| || |||||||| || ||||| |||||||||| ||| || ||||| |||| | ||||||||| | |||| |||||| || ||| |
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| T |
32067026 |
atgtaaatgttcaaagagtgttccatttggggcatattcaaaaaccaccattctggtgaaaggctcgtcttcttcacaaaatccaagaagatttacgaaa |
32067125 |
T |
|
| Q |
626 |
ttcttgtggttcaaccttgataa |
648 |
Q |
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||||||||||||| | ||||||| |
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| T |
32067126 |
ttcttgtggttcatctttgataa |
32067148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 523 - 638
Target Start/End: Original strand, 37747769 - 37747884
Alignment:
| Q |
523 |
actatgtagatgctcaaacagcgttccattcggagcatactcaaaaaccatcatccttgtgaatggcttattctcttcacaataaccaataagattcaca |
622 |
Q |
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|||||||| ||||||||| || |||||||| || ||||| |||||||||| ||| || ||||| |||| | ||||||||||| ||||||||||| ||| |
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| T |
37747769 |
actatgtaaatgctcaaatagtgttccatttggggcatattcaaaaaccaacattctggtgaaaggctcttcttcttcacaatatccaataagattgaca |
37747868 |
T |
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| Q |
623 |
aaattcttgtggttca |
638 |
Q |
| |
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|||||||||||||||| |
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| T |
37747869 |
aaattcttgtggttca |
37747884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 380 - 427
Target Start/End: Complemental strand, 33062733 - 33062686
Alignment:
| Q |
380 |
aaatatatcgctttttgattttggtccttgttattttattttagtccc |
427 |
Q |
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|||||||||| ||||||||||||||||||||| |||| |||||||||| |
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| T |
33062733 |
aaatatatcgatttttgattttggtccttgttgttttgttttagtccc |
33062686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 521 - 618
Target Start/End: Original strand, 35832150 - 35832247
Alignment:
| Q |
521 |
ttactatgtagatgctcaaacagcgttccattcggagcatactcaaaaaccatcatccttgtgaatggcttattc-tcttcacaataaccaataagatt |
618 |
Q |
| |
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|||| |||||||||||| || | ||||||| ||||||||||| || |||||||||||||||||||| || ||| || ||||| |||||||||||||| |
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| T |
35832150 |
ttaccatgtagatgctcgaataagcttccatttggagcatactccaacaccatcatccttgtgaatgg-ttcttcttcgtcacagtaaccaataagatt |
35832247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 381 - 427
Target Start/End: Complemental strand, 14947783 - 14947737
Alignment:
| Q |
381 |
aatatatcgctttttgattttggtccttgttattttattttagtccc |
427 |
Q |
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|||||| | ||||||| ||||||||||||||||||| |||||||||| |
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| T |
14947783 |
aatataccactttttgtttttggtccttgttattttgttttagtccc |
14947737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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