View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0945_low_43 (Length: 317)
Name: NF0945_low_43
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0945_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 42559324 - 42559556
Alignment:
| Q |
9 |
gatgaaaggagtgtgagatgtaagaaaggagaaagtagtgtctgtggatgatgatgatgatgtgtggagttttgatctgaggataggatgggaattttgt |
108 |
Q |
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| T |
42559324 |
gatgaaaggagtgtgagatgtaagaaaggagaaagtagtgtctgtggatg---atgatgatgtgtggagttttgatctgaggataggatgggaattttgt |
42559420 |
T |
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| Q |
109 |
agtttgtggagtgaggtttgaaaacgggaaatatcaatgggttttgtgatgtgtagtgataaaactgcaatgccggtgccaccacgaatggctttgcacc |
208 |
Q |
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| T |
42559421 |
agtttgtggagtgaggtttgaaaacgggaaatatcaatgggttttgtgatgagtagtgataaaactgcaatgccggtgccaccacgaatggctttgcacc |
42559520 |
T |
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| Q |
209 |
agctacattctgtgccaccaacattacgaccctttg |
244 |
Q |
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| T |
42559521 |
agctacattctgtgccaccaacattacgaccttttg |
42559556 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 25993977 - 25993941
Alignment:
| Q |
85 |
ctgaggataggatgggaattttgtagtttgtggagtg |
121 |
Q |
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| T |
25993977 |
ctgaggataggatgggaattttggagtttgtggagtg |
25993941 |
T |
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