View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0945_low_45 (Length: 303)
Name: NF0945_low_45
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0945_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 39 - 291
Target Start/End: Original strand, 32611752 - 32612004
Alignment:
| Q |
39 |
agaagattcttatctacttcttaacaatgataatgagaaaggagttattactgaatcttcttctaattcagaggagtattgtaagcaaatgtatgggttt |
138 |
Q |
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| T |
32611752 |
agaagattcatatctacttcttaacaatgataatgacaaaggagttattactgaatcttcttctaattcagaggagtattgtaaacaaatgtatgggttt |
32611851 |
T |
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| Q |
139 |
ttgccatgttctaataacattcttggtcatttatttctgatattggtttatgagtacttattgttccatggagaatcatatttggctgctggaggtgaac |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32611852 |
ttgccatgttctaataacattcttggtcatttatttctgatattggtttatgagtacttattgttccatggagaatcatatttggctgctggaggtgaac |
32611951 |
T |
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| Q |
239 |
aaatcttcaagattcttggtccaggtgtttttggtgctagtgcttttgatatt |
291 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32611952 |
aaatattcaagattcttggtccaggtgtttttggtgctagtgcttttgatatt |
32612004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 39 - 291
Target Start/End: Original strand, 32629958 - 32630210
Alignment:
| Q |
39 |
agaagattcttatctacttcttaacaatgataatgagaaaggagttattactgaatcttcttctaattcagaggagtattgtaagcaaatgtatgggttt |
138 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32629958 |
agaagattcatatctacttcttaacaatgataatgacaaaggagttattactgaatcttcttctaattcagaggagtattgtaaacaaatgtatgggttt |
32630057 |
T |
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| Q |
139 |
ttgccatgttctaataacattcttggtcatttatttctgatattggtttatgagtacttattgttccatggagaatcatatttggctgctggaggtgaac |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32630058 |
ttgccatgttctaataacattcttggtcatttatttctgatattggtttatgagtacttattgttccatggagaatcatatttggctgctggaggtgaac |
32630157 |
T |
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| Q |
239 |
aaatcttcaagattcttggtccaggtgtttttggtgctagtgcttttgatatt |
291 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32630158 |
aaatattcaagattcttggtccaggtgtttttggtgctagtgcttttgatatt |
32630210 |
T |
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