View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0945_low_46 (Length: 302)
Name: NF0945_low_46
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0945_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 64 - 242
Target Start/End: Original strand, 35889364 - 35889542
Alignment:
| Q |
64 |
gctgttgctcctcctatagttttcaaaggaaaatccctgacgtacgtcaacttactctacacactcaatttaacttgaaaatattgctttttcgactaca |
163 |
Q |
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| T |
35889364 |
gctgttgctcctcctatagttttcaaaggaaaatccctgacgtacgtcaacttactctacacactcaatttaacttgaaaatattgctttttcgactaca |
35889463 |
T |
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| Q |
164 |
tttttgtggcaaagagacaacatttaaattcgaaagaaaatttgtaaattttggtttttaatgtgtttgtgttcatctc |
242 |
Q |
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| T |
35889464 |
tttttgtggcaaagagacaacatttaaattcgaaagaaaatttgtaaattttggtttttaatgtgtttgtgttcatctc |
35889542 |
T |
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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 3135106 - 3135063
Alignment:
| Q |
64 |
gctgttgctcctcctatagttttcaaaggaaaatccctgacgta |
107 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3135106 |
gctgttgcccctcctatagttttcaaaggaaaatccctgacgta |
3135063 |
T |
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