View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0945_low_5 (Length: 706)
Name: NF0945_low_5
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0945_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 528; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 3 - 635
Target Start/End: Complemental strand, 24295819 - 24295176
Alignment:
| Q |
3 |
gctcttatgtctttcaatggtggtgtgtttttggttgctgtgcttggtcatgctcttggattcttcttatgtagcagtgcttttaggaaaccaaaacaac |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24295819 |
gctcttatgtctttcaatggtggtgtgtttttggttgctgtgcttggtcatgctcttggattcttcttatgtagcagtgcttttaggaaaccaaaacaac |
24295720 |
T |
|
| Q |
103 |
atgatgaggcttatgatcttcctccgttgtcttgttaattgtttct---------taaatttataccttttgtttcctctgttagttaattataaattaa |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24295719 |
atgatgaggcttatgatcttcctccgttgtcttgttaattgtttctactgtttcttaaatttataccttttgtttcctttgttagttaattataaattaa |
24295620 |
T |
|
| Q |
194 |
taataattacaaaagtgctactattttgcagttattgtcttgggtatcaaattttgt-atgaaattgcagttggtttaaaatatagatttctttttgaat |
292 |
Q |
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||||||| |||||| | |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24295619 |
taataatcacaaaactactactattttgcagttattgtcttgggtatcaaactttgttatgaaattgcagttggtttaaaatatagatttctttttgaag |
24295520 |
T |
|
| Q |
293 |
taaaatttgtggtgaggttagttgcgtggcccgcaggctcatttagggttagtatatgagagttgaacctacgtc-ttgcaggtaaaagtcaatttctta |
391 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
24295519 |
taaaatttgaggtgaggttagttgcgtggcccgcaggctcatttagggttagtatacgagagttgaacctacgtccttgccggtaaaagtcaatttctta |
24295420 |
T |
|
| Q |
392 |
ctaattggtttgcattttgttgataatttgtaaatttgtaattgtctccgtgcgatttatgtcaatctagtataatataaaaacttatgcaaaaatgact |
491 |
Q |
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| T |
24295419 |
ctaattggtttgcgttttgttgataatttgtaaatttgtaattgtctccgtgcgatttatgtcaatcttgtgtaatataaaaacttatgcaaaaatgatt |
24295320 |
T |
|
| Q |
492 |
atttcagtttggcactagagaaaacaatggttctctaatgccttgcataaggagcatgtgtgagataatgactctttggaccccgtagttagactacaaa |
591 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24295319 |
atttgagtttggcactagagaaaacaatggttttctaatgccttgcataaggagcatgtgtgagataatgaccctttggaccccgtagttagactacaaa |
24295220 |
T |
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| Q |
592 |
ctttgggtattgcattttttgtttactcacctttggatattatt |
635 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
24295219 |
ctttgggtattgtattttttgtttactcacctttggatattatt |
24295176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 24508686 - 24508608
Alignment:
| Q |
9 |
atgtctttcaatggtggtgtgtttttggttgctgtgcttggtcatgctcttggattcttcttatgtagcagtgctttta |
87 |
Q |
| |
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||||||||||||||||| ||||| ||||||| ||| |||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
24508686 |
atgtctttcaatggtggagtgttcttggttgttgtacttggtcatgctcttggattcttcgtatgtagccgtgctttta |
24508608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 3 - 142
Target Start/End: Complemental strand, 24511092 - 24510956
Alignment:
| Q |
3 |
gctcttatgtctttcaatggtggtgtgtttttggttgctgtgcttggtcatgctcttggattcttcttatgtagcagtgcttttaggaaaccaaaacaac |
102 |
Q |
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||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| |||| |||||||| ||||| ||||||| | ||||| ||| | |
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| T |
24511092 |
gctctcatgtctttcaatggtggagtgttcttggttgctgtgcttggtcatgctgttgggttcttctttcgtagccgtgctttcaaaaaacc---acatc |
24510996 |
T |
|
| Q |
103 |
atgatgaggcttatgatcttcctccgttgtcttgttaatt |
142 |
Q |
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| T |
24510995 |
aagatgagaatttcgatcttcctccgttatcttgttaatt |
24510956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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