View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0945_low_54 (Length: 284)
Name: NF0945_low_54
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0945_low_54 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 63 - 240
Target Start/End: Complemental strand, 29151426 - 29151249
Alignment:
| Q |
63 |
ataacaaattaaacaaaacaatccattgcaaaatccaatagcattgcgaaattccatatctttacttggataacaaatatcttgactttcataacaaagg |
162 |
Q |
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| T |
29151426 |
ataacaaattaaacaaaacaatccattgcaaaatccaatagcattgcgaaattccatatctttacttggataacaaatatcttgactttcataacaaagg |
29151327 |
T |
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| Q |
163 |
ttatccggaaggaggatccacgggttctcaagaagaattaaacgacgcaccgggaagggaataagtttctttcctatg |
240 |
Q |
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| T |
29151326 |
ttatccggaaggaggatccacgggttctcaagaagaattaaacgacgcaccgggaagggaataagtttcttgcctatg |
29151249 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 2586044 - 2585991
Alignment:
| Q |
141 |
atcttgactttcataacaaaggttatccggaaggaggatccacgggttctcaag |
194 |
Q |
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| T |
2586044 |
atcttgacattgataacaaaggttatccggaaggaggatcaacgggttctcaag |
2585991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 2595410 - 2595329
Alignment:
| Q |
139 |
atatcttgactttcataacaaaggttatccggaaggaggatccacgggttctcaagaagaattaaacgacgcaccgggaagggaa |
223 |
Q |
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| T |
2595410 |
atatcttgacatcgatagcaaaggttctccggaaggaggatcaacgggttctc---aaggattaaacgatgcaccgggaagggaa |
2595329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 2580696 - 2580619
Alignment:
| Q |
140 |
tatcttgactttcataacaaaggttatccggaaggaggatccacgggttctcaagaagaattaaacgacgcaccgggaagg |
220 |
Q |
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| T |
2580696 |
tatcttgacattcaatacgaaggttatctggaaggaggatcgacgggttctc---gagaattaaacgacgcatcgggaagg |
2580619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 2580753 - 2580709
Alignment:
| Q |
62 |
aataacaaattaaacaaaacaatccattgcaaaatccaatagcat |
106 |
Q |
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| T |
2580753 |
aataaccaatcaaacaaaacaatctattgcaagatccaatagcat |
2580709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 2595466 - 2595422
Alignment:
| Q |
62 |
aataacaaattaaacaaaacaatccattgcaaaatccaatagcat |
106 |
Q |
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| T |
2595466 |
aataaccaatcaaacaaaacattccattgcaagatccaatagcat |
2595422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 30398500 - 30398416
Alignment:
| Q |
139 |
atatcttgactttcataacaaaggttatccggaaggaggatccacgggttctcaagaagaattaaacgacgcaccgggaagggaataa |
226 |
Q |
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| T |
30398500 |
atatcttgacatcgataactagggttatacggaaggaggatcaacgggttctc---gagaattaaaagatgcaccgggaagggaataa |
30398416 |
T |
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