View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0945_low_60 (Length: 270)
Name: NF0945_low_60
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0945_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 47720539 - 47720332
Alignment:
| Q |
20 |
atattcaagcccttccattgttctacctcctatatattcatcaccaaacttccccttaaaaaattgtcctccatggtggagttctacttgaaatctaggg |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47720539 |
atattcaagcccttccattgttctacctcctatatattcattaccaaacttccccttaaaaaattgtcctccatggtggagttctacttgaaatttaggg |
47720440 |
T |
|
| Q |
120 |
tcatccgtctccgtgatataaataataacaagaacaacaagctcaagatatcaacaacaataagaataaactcatattaaaaataaaaagaataacatca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47720439 |
tcatccgtctccgtgatataaataataacaagaacaacaagctcaaaatatcaacaacaataagaataaactcatattaacaataaaaagaataacatca |
47720340 |
T |
|
| Q |
220 |
atgatagt |
227 |
Q |
| |
|
|||||||| |
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|
| T |
47720339 |
atgatagt |
47720332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 47727531 - 47727324
Alignment:
| Q |
20 |
atattcaagcccttccattgttctacctcctatatattcatcaccaaacttccccttaaaaaattgtcctccatggtggagttctacttgaaatctaggg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47727531 |
atattcaagcccttccattgttctacctcctatatattcattaccaaacttccccttaaaaaattgtcctccatggtggagttctacttgaaatttaggg |
47727432 |
T |
|
| Q |
120 |
tcatccgtctccgtgatataaataataacaagaacaacaagctcaagatatcaacaacaataagaataaactcatattaaaaataaaaagaataacatca |
219 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47727431 |
tcatccgtctccgtgatataaataataacaagaacaacaagctcaaaatatcaacaacaataagaataaactcatattaacaataaaaagaataacatca |
47727332 |
T |
|
| Q |
220 |
atgatagt |
227 |
Q |
| |
|
|||||||| |
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|
| T |
47727331 |
atgatagt |
47727324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 47753460 - 47753258
Alignment:
| Q |
20 |
atattcaagcccttccattgttctacctcctatatattcatcaccaaacttccccttaaaaaattgtcctccatggtggagttctacttgaaatctaggg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||| ||| |||| ||||| |
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| T |
47753460 |
atattcaagcccttccattgttctacctcctatatattcattaccaaacttcccatttaaaaattgtcctccatggtggagttctgcttcaaatataggg |
47753361 |
T |
|
| Q |
120 |
tcatccgtctccgtgatataaataataacaagaacaacaagctcaagatatcaacaacaataagaataaactcatattaaaaataaaaagaataacatca |
219 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| |||| || |
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|
| T |
47753360 |
tcatccgtctccgtaatataaataataacaagaacaacaagctcaaaatatcaacaacaataagaataaactcatattaataataagaagaacaacaaca |
47753261 |
T |
|
| Q |
220 |
atg |
222 |
Q |
| |
|
||| |
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|
| T |
47753260 |
atg |
47753258 |
T |
|
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