View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0945_low_63 (Length: 257)
Name: NF0945_low_63
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0945_low_63 |
 |  |
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[»] scaffold0041 (1 HSPs) |
 |  |  |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 24543091 - 24543324
Alignment:
Q |
4 |
tcattatgacaatgttgattttgttttggattgcaagtttgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcag |
103 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
24543091 |
tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag |
24543190 |
T |
 |
Q |
104 |
gcttgtaaatagttgttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccc |
203 |
Q |
|
|
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
T |
24543191 |
gcttgtagatagttgttcgattgtaattttcagaactctcatgtcgagttcaataggatgcaagccaatggggtcgctcatgaattagctagggtagccc |
24543290 |
T |
 |
Q |
204 |
catctcatgctagctcccacgtttatgatgatgt |
237 |
Q |
|
|
|||||||||||||||||||||||||||||||||| |
|
|
T |
24543291 |
catctcatgctagctcccacgtttatgatgatgt |
24543324 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 29894554 - 29894321
Alignment:
Q |
4 |
tcattatgacaatgttgattttgttttggattgcaagtttgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcag |
103 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
T |
29894554 |
tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactagattgtattattcag |
29894455 |
T |
 |
Q |
104 |
gcttgtaaatagttgttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccc |
203 |
Q |
|
|
||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
T |
29894454 |
gcttgtagacagttgttcgattgtaattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccc |
29894355 |
T |
 |
Q |
204 |
catctcatgctagctcccacgtttatgatgatgt |
237 |
Q |
|
|
|||||||||||||||||||||||||||||||||| |
|
|
T |
29894354 |
catctcatgctagctcccacgtttatgatgatgt |
29894321 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 36364918 - 36365151
Alignment:
Q |
4 |
tcattatgacaatgttgattttgttttggattgcaagtttgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcag |
103 |
Q |
|
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
36364918 |
tcattatgacaatgttgattttgttttggattccaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcat |
36365017 |
T |
 |
Q |
104 |
gcttgtaaatagttgttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccc |
203 |
Q |
|
|
|||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
T |
36365018 |
acttgtaggcagttgttcgattgtcattttcagaactcccatgtcgagttcaataggaggcaagccaatgaggtcgctcatgaattagctagggtagccc |
36365117 |
T |
 |
Q |
204 |
catctcatgctagctcccacgtttatgatgatgt |
237 |
Q |
|
|
||||||||||||||||||||||||||| |||||| |
|
|
T |
36365118 |
catctcatgctagctcccacgtttatggtgatgt |
36365151 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 130 - 237
Target Start/End: Complemental strand, 40287124 - 40287017
Alignment:
Q |
130 |
ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatctcatgctagctcccacgtttat |
229 |
Q |
|
|
|||||| |||||||||||| |||| |||| ||||||||| ||||||||| ||||||||||||| |||||| |||||||| || ||||| || | ||||| |
|
|
T |
40287124 |
ttttcaaaactctcatgtcaagtttaatatgaggcaagctaatggggtcactcatgaattagcgagggtagccccatctgatcctagccccaccatttat |
40287025 |
T |
 |
Q |
230 |
gatgatgt |
237 |
Q |
|
|
|||||||| |
|
|
T |
40287024 |
gatgatgt |
40287017 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 12555466 - 12555415
Alignment:
Q |
130 |
ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgct |
181 |
Q |
|
|
||||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
T |
12555466 |
ttttcagaactctcatgtcaagttcaataggaggcaagttaatggggtcgct |
12555415 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 18)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 11351830 - 11351597
Alignment:
Q |
4 |
tcattatgacaatgttgattttgttttggattgcaagtttgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcag |
103 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
11351830 |
tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag |
11351731 |
T |
 |
Q |
104 |
gcttgtaaatagttgttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccc |
203 |
Q |
|
|
||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
T |
11351730 |
gcttgtagacagttgttcgattgtaattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccc |
11351631 |
T |
 |
Q |
204 |
catctcatgctagctcccacgtttatgatgatgt |
237 |
Q |
|
|
||||||||||||||| |||||||||||||||||| |
|
|
T |
11351630 |
catctcatgctagcttccacgtttatgatgatgt |
11351597 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 7 - 237
Target Start/End: Original strand, 6784159 - 6784389
Alignment:
Q |
7 |
ttatgacaatgttgattttgttttggattgcaagtttgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggct |
106 |
Q |
|
|
||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
6784159 |
ttatgacaatgttgattttgttttggattgcaagtctcttgttgaacgttttaatttaaacctaggtgatagcagtgaactaggttgtattattcaggct |
6784258 |
T |
 |
Q |
107 |
tgtaaatagttgttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccat |
206 |
Q |
|
|
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| | |||| |
|
|
T |
6784259 |
tgtagacagttgttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgcttatgaattaactagggtagctccat |
6784358 |
T |
 |
Q |
207 |
ctcatgctagctcccacgtttatgatgatgt |
237 |
Q |
|
|
||||| |||||| ||||||||||||| |||| |
|
|
T |
6784359 |
ctcatactagcttccacgtttatgataatgt |
6784389 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 21515101 - 21515314
Alignment:
Q |
22 |
ttttgttttggattgcaagtttgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtaaatagttgttc |
121 |
Q |
|
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| |
|
|
T |
21515101 |
ttttgttttggattgcaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtatttttcaggtttgtaggcagttgttc |
21515200 |
T |
 |
Q |
122 |
gattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatctcatgctagctccc |
221 |
Q |
|
|
|| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
T |
21515201 |
gaatgtaattttcagaactc--atgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagctccc |
21515298 |
T |
 |
Q |
222 |
acgtttatgatgatgt |
237 |
Q |
|
|
|||||||||||||||| |
|
|
T |
21515299 |
acgtttatgatgatgt |
21515314 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 4 - 201
Target Start/End: Original strand, 20639468 - 20639665
Alignment:
Q |
4 |
tcattatgacaatgttgattttgttttggattgcaagtttgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcag |
103 |
Q |
|
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
T |
20639468 |
tcattatgacaatgttgattttgttttggattccaagtttgttgttgaacattttaattcaaacctaggtgatagtagtgaactaggttgtattattcag |
20639567 |
T |
 |
Q |
104 |
gcttgtaaatagttgttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaac |
201 |
Q |
|
|
||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||| ||||| |
|
|
T |
20639568 |
gcttgtaggcagttgttcgattgtaattttcagaactctcatgttgagttcaataggaggcaagccaatgaggtcactcatgaattagctagtgtaac |
20639665 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 32989121 - 32988886
Alignment:
Q |
4 |
tcattatgacaatgttgattttgttttggattgcaagtttgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcag |
103 |
Q |
|
|
|||||||||| |||| |||||||||| ||||| ||||| |||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||| |
|
|
T |
32989121 |
tcattatgacgatgtggattttgtttcggattccaagtatgttgttgaacgttttaatttaaacttacgtgatagcagtgaactaggttgtattattcag |
32989022 |
T |
 |
Q |
104 |
gcttgtaaatagttgttcgattgttattttcagaactctcatgtcgagt----tcaataggaggcaagccaatggggtcgctcatgaattagctagggta |
199 |
Q |
|
|
|||||| |||||||||||||| | |||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||| ||||||| |
|
|
T |
32989021 |
acttgtaggcagttgttcgattgtaactttcagaactctcatgtcgagttatatatataggaggcaagccaat--tttcgctcatgaattagttagggta |
32988924 |
T |
 |
Q |
200 |
accccatctcatgctagctcccacgtttatgatgatgt |
237 |
Q |
|
|
|||||||||||||||||| || ||||||||||||||| |
|
|
T |
32988923 |
gccccatctcatgctagcttccgcgtttatgatgatgt |
32988886 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 2536589 - 2536489
Alignment:
Q |
130 |
ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatctcatgctagctcccacgtttat |
229 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||| |
|
|
T |
2536589 |
ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagttagggtagccccatctcatgctagctcccatgtttat |
2536490 |
T |
 |
Q |
230 |
g |
230 |
Q |
|
|
| |
|
|
T |
2536489 |
g |
2536489 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 130 - 237
Target Start/End: Complemental strand, 44839964 - 44839857
Alignment:
Q |
130 |
ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatctcatgctagctcccacgtttat |
229 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||| ||||||||||| |||||||| |
|
|
T |
44839964 |
ttttcagaactctcatgtcgagttcaataggaggcaagttaatggggtcgctcatgagttagctagggtagccccatctaatgctagctcctacgtttat |
44839865 |
T |
 |
Q |
230 |
gatgatgt |
237 |
Q |
|
|
||| |||| |
|
|
T |
44839864 |
gataatgt |
44839857 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 208
Target Start/End: Complemental strand, 51080779 - 51080701
Alignment:
Q |
130 |
ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatct |
208 |
Q |
|
|
|||||| ||||||||||||||||| |||||||||||| | ||||||||||||||||||||||| |||||| |||||||| |
|
|
T |
51080779 |
ttttcaaaactctcatgtcgagtttaataggaggcaatctaatggggtcgctcatgaattagcgagggtagccccatct |
51080701 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 39648462 - 39648376
Alignment:
Q |
132 |
ttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatctcatgctagct |
218 |
Q |
|
|
|||||||||||| ||||||||| ||||| || ||||| ||| ||||||||||||||||||| |||| |||||||||||||||||| |
|
|
T |
39648462 |
ttcagaactctcgtgtcgagtttaatagaagtcaagctaattaggtcgctcatgaattagctcaggtagccccatctcatgctagct |
39648376 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 2114361 - 2114423
Alignment:
Q |
131 |
tttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagct |
193 |
Q |
|
|
|||||||||||||||||||||||||| |||| | |||| |||||||||||||| ||||||||| |
|
|
T |
2114361 |
tttcagaactctcatgtcgagttcaacaggaaggaagcgaatggggtcgctcacgaattagct |
2114423 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 3601327 - 3601265
Alignment:
Q |
131 |
tttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagct |
193 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||| |||| ||| ||||| || |||||| |
|
|
T |
3601327 |
tttcagaactctcatgtcgagttcaataggaggcaagcgaatgaggttgctcacgagttagct |
3601265 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 17321880 - 17321942
Alignment:
Q |
131 |
tttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagct |
193 |
Q |
|
|
|||||||||||||||||||||||||| ||||||||||| ||| |||| ||||| || |||||| |
|
|
T |
17321880 |
tttcagaactctcatgtcgagttcaacaggaggcaagcaaatagggtagctcacgagttagct |
17321942 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 26418845 - 26418788
Alignment:
Q |
137 |
aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagcta |
194 |
Q |
|
|
||||||||||||||||| | |||||||||||| |||| ||| |||||||||||||||| |
|
|
T |
26418845 |
aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta |
26418788 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 32108435 - 32108492
Alignment:
Q |
137 |
aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagcta |
194 |
Q |
|
|
||||||||||||||||| | |||||||||||| |||| ||| |||||||||||||||| |
|
|
T |
32108435 |
aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta |
32108492 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 12539121 - 12539183
Alignment:
Q |
131 |
tttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagct |
193 |
Q |
|
|
|||||||||||||||||||||||||| ||||||||||| ||| || | ||||| || |||||| |
|
|
T |
12539121 |
tttcagaactctcatgtcgagttcaacaggaggcaagcaaataggatagctcacgagttagct |
12539183 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 237
Target Start/End: Complemental strand, 52823539 - 52823473
Alignment:
Q |
171 |
atggggtcgctcatgaattagctagggtaaccccatctcatgctagctcccacgtttatgatgatgt |
237 |
Q |
|
|
||||||||||||||||||||| ||||||| | ||||||||| ||| |||| | ||||| |||||||| |
|
|
T |
52823539 |
atggggtcgctcatgaattagttagggtagctccatctcatactaactcctatgtttacgatgatgt |
52823473 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 5811388 - 5811443
Alignment:
Q |
139 |
ctctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagcta |
194 |
Q |
|
|
||||||||||||||| |||||||| ||| | |||||||| |||||| ||||||||| |
|
|
T |
5811388 |
ctctcatgtcgagtttaataggagacaaacaaatggggtagctcattaattagcta |
5811443 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 4179980 - 4180028
Alignment:
Q |
137 |
aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatg |
185 |
Q |
|
|
||||||||||||||||| | |||||||||||| |||| ||| ||||||| |
|
|
T |
4179980 |
aactctcatgtcgagtttattaggaggcaagcaaatgaggttgctcatg |
4180028 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 18481111 - 18481344
Alignment:
Q |
4 |
tcattatgacaatgttgattttgttttggattgcaagtttgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcag |
103 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
18481111 |
tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag |
18481210 |
T |
 |
Q |
104 |
gcttgtaaatagttgttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccc |
203 |
Q |
|
|
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||| |||||||||||||| ||| |
|
|
T |
18481211 |
gcttgtagatagttgttcgattgtaattttcagaactctcatgtcgagttcaataggaggtaagtcaatggggtcactcataaattagctagggtagccc |
18481310 |
T |
 |
Q |
204 |
catctcatgctagctcccacgtttatgatgatgt |
237 |
Q |
|
|
|||||||||||||||||||||||||||||||||| |
|
|
T |
18481311 |
catctcatgctagctcccacgtttatgatgatgt |
18481344 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 32536357 - 32536156
Alignment:
Q |
6 |
attatgacaatgttgattttgttttggattgcaagtttgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggc |
105 |
Q |
|
|
||||||| |||| ||||||| |||||||| ||||||| |||| || || ||| |||||||||||| |||| |||||||||||||||||||||||||| |
|
|
T |
32536357 |
attatgatcatgtcgattttgctttggattacaagtttattgtagatcgctttcattcaaacctagacgataatagtgaactaggttgtattattcaggc |
32536258 |
T |
 |
Q |
106 |
ttgtaaatagttgttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaacccca |
205 |
Q |
|
|
||||||| | ||| | | |||| ||||| ||||||| |||||||||||||| | | |||| ||||||||||||| |||||||||||||||| ||||| |
|
|
T |
32536257 |
ttgtaaacaattgattgcttgtaattttatgaactcttatgtcgagttcaattgaaaacaagttaatggggtcgctcgtgaattagctagggtagcccca |
32536158 |
T |
 |
Q |
206 |
tc |
207 |
Q |
|
|
|| |
|
|
T |
32536157 |
tc |
32536156 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 26440810 - 26440917
Alignment:
Q |
130 |
ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatctcatgctagctcccacgtttat |
229 |
Q |
|
|
|||| |||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| |||||||| |||||||||| |||| |||| |
|
|
T |
26440810 |
tttttagaactctcatgtcgagttcaataggaggcaagctaatggggttgctcatgagttagctagggtagccccatctaatgctagctctcacgattat |
26440909 |
T |
 |
Q |
230 |
gatgatgt |
237 |
Q |
|
|
||| |||| |
|
|
T |
26440910 |
gataatgt |
26440917 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 7251110 - 7251217
Alignment:
Q |
130 |
ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatctcatgctagctcccacgtttat |
229 |
Q |
|
|
||||||||||||| ||||||||||||||||||||||| |||||||| || |||||| |||| ||| |||| |||||||||||||||||| ||| | |||| |
|
|
T |
7251110 |
ttttcagaactcttatgtcgagttcaataggaggcaaaccaatgggatcactcatgcattaactaaggtagccccatctcatgctagcttccatgattat |
7251209 |
T |
 |
Q |
230 |
gatgatgt |
237 |
Q |
|
|
||| |||| |
|
|
T |
7251210 |
gataatgt |
7251217 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 219
Target Start/End: Complemental strand, 11911471 - 11911382
Alignment:
Q |
130 |
ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatctcatgctagctc |
219 |
Q |
|
|
|||||| ||||||||||||||||||||||||||| || | ||||||||| | || || |||||| ||| | |||||| | || ||||||| |
|
|
T |
11911471 |
ttttcaaaactctcatgtcgagttcaataggaggtaaacgaatggggtcccccacgagttagctcgggaagccccatttaatcctagctc |
11911382 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 18)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 36684783 - 36685016
Alignment:
Q |
4 |
tcattatgacaatgttgattttgttttggattgcaagtttgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcag |
103 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
T |
36684783 |
tcattatgacaatgttgattttgttttggattgcaagtttgttgttgaacattttaattcaaacctaggtgatagtagtgaactaggttgtatcattcag |
36684882 |
T |
 |
Q |
104 |
gcttgtaaatagttgttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccc |
203 |
Q |
|
|
||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
T |
36684883 |
gcttgtagacagttgttcgattgtaattttcagaactctcatgtcgagttcaataggaggcaagctaatggggtcgctcatgaattagctagggtagccc |
36684982 |
T |
 |
Q |
204 |
catctcatgctagctcccacgtttatgatgatgt |
237 |
Q |
|
|
|||||||||||||||| ||||||||||||||||| |
|
|
T |
36684983 |
catctcatgctagctctcacgtttatgatgatgt |
36685016 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 51976638 - 51976871
Alignment:
Q |
4 |
tcattatgacaatgttgattttgttttggattgcaagtttgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcag |
103 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
51976638 |
tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag |
51976737 |
T |
 |
Q |
104 |
gcttgtaaatagttgttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccc |
203 |
Q |
|
|
||||||| | ||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
|
|
T |
51976738 |
gcttgtagaaagttgtttgattgtaattttcagaactctcatgccgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagctc |
51976837 |
T |
 |
Q |
204 |
catctcatgctagctcccacgtttatgatgatgt |
237 |
Q |
|
|
|||||||||||||||||||||||||||||||||| |
|
|
T |
51976838 |
catctcatgctagctcccacgtttatgatgatgt |
51976871 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 8705594 - 8705823
Alignment:
Q |
8 |
tatgacaatgttgattttgttttggattgcaagtttgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggctt |
107 |
Q |
|
|
|||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
T |
8705594 |
tatgaccatgttgattttgttttggattccaagtatgttgttgaacgttttaattcaaacctagttgatagtagtgaactaggttgtattattcaggctt |
8705693 |
T |
 |
Q |
108 |
gtaaatagttgttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatc |
207 |
Q |
|
|
||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| ||||||| ||||||| |
|
|
T |
8705694 |
gtaggcagttgtttgattgtaattttcagaactctcatgtcgagttcaataggaggcaagctaatgaggtcgcttatgaattagttagggtagccccatc |
8705793 |
T |
 |
Q |
208 |
tcatgctagctcccacgtttatgatgatgt |
237 |
Q |
|
|
|||| ||||||||||||||||||||||||| |
|
|
T |
8705794 |
tcatactagctcccacgtttatgatgatgt |
8705823 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 9057481 - 9057710
Alignment:
Q |
8 |
tatgacaatgttgattttgttttggattgcaagtttgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggctt |
107 |
Q |
|
|
|||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
T |
9057481 |
tatgaccatgttgattttgttttggattccaagtatgttgttgaacgttttaattcaaacctagttgatagtagtgaactaggttgtattattcaggctt |
9057580 |
T |
 |
Q |
108 |
gtaaatagttgttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatc |
207 |
Q |
|
|
||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| ||||||| ||||||| |
|
|
T |
9057581 |
gtaggcagttgtttgattgtaattttcagaactctcatgtcgagttcaataggaggcaagctaatgaggtcgcttatgaattagttagggtagccccatc |
9057680 |
T |
 |
Q |
208 |
tcatgctagctcccacgtttatgatgatgt |
237 |
Q |
|
|
|||| ||||||||||||||||||||||||| |
|
|
T |
9057681 |
tcatactagctcccacgtttatgatgatgt |
9057710 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 45736356 - 45736577
Alignment:
Q |
16 |
tgttgattttgttttggattgcaagtttgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtaaatag |
115 |
Q |
|
|
|||||||||||||||||||| ||||||||||||| |||||||||||| ||| |||| ||||||||||||| |||||||||||||| ||| ||||| | |
|
|
T |
45736356 |
tgttgattttgttttggatttcaagtttgttgttcaacgttttaatttaaatctagatgatagcagtgaattaggttgtattatttaggtttgtaggcaa |
45736455 |
T |
 |
Q |
116 |
ttgttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatctcatgcta |
215 |
Q |
|
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||| | |||||||||||||| || |||||||||||| |
|
|
T |
45736456 |
ttgttcgattgtaattttcagaactctcatgtcgagttcaataggaggcagaccaatgggaacgctcgtaaattagctagggtagcctcatctcatgcta |
45736555 |
T |
 |
Q |
216 |
gctcccacgtttatgatgatgt |
237 |
Q |
|
|
||||||||||||||||||||| |
|
|
T |
45736556 |
actcccacgtttatgatgatgt |
45736577 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 234
Target Start/End: Complemental strand, 4978648 - 4978417
Alignment:
Q |
4 |
tcattatgacaatgttgattttgttttggattgcaagtttgttgtt-gaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattca |
102 |
Q |
|
|
||||| |||||||||| ||||||||||||||| ||| | ||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
T |
4978648 |
tcattctgacaatgttaattttgttttggattccaaatatgttgtttgaacgttttaattcaaacctaggtgataatagtaaactaggttgtattattct |
4978549 |
T |
 |
Q |
103 |
ggcttgtaaatagttgttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaacc |
202 |
Q |
|
|
|||||||| | ||||||| || | ||||||||||||||||||||||||| |||| ||| |||||||||| ||||| ||||||||||||||| ||| || |
|
|
T |
4978548 |
ggcttgtaggcacttgttcggttataattttcagaactctcatgtcgagtttaatatgagacaagccaatgaggtcgttcatgaattagctagcgtagcc |
4978449 |
T |
 |
Q |
203 |
ccatctcatgctagctcccacgtttatgatga |
234 |
Q |
|
|
|||||||||||| ||| | | |||||||||| |
|
|
T |
4978448 |
acatctcatgctaactcgcgcatttatgatga |
4978417 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 53 - 199
Target Start/End: Complemental strand, 49759102 - 49758956
Alignment:
Q |
53 |
cgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtaaatagttgttcgattgttattttcagaactctcatgtcgagt |
152 |
Q |
|
|
||||||||||||||||||| ||||| |||||||||||||| ||||||||| |||||| |||| | | |||| |||||||||||||| |||||| || |
|
|
T |
49759102 |
cgttttaattcaaacctagaggatagtagtgaactaggttgcattattcagacttgtaggctgttgcttgcttgtaattttcagaactcttatgtcgggt |
49759003 |
T |
 |
Q |
153 |
tcaataggaggcaagccaatggggtcgctcatgaattagctagggta |
199 |
Q |
|
|
|||||||||||||||| |||||| ||||||||||||| |||||||| |
|
|
T |
49759002 |
tcaataggaggcaagctaatgggatcgctcatgaattgactagggta |
49758956 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 237
Target Start/End: Complemental strand, 47165452 - 47165345
Alignment:
Q |
130 |
ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatctcatgctagctcccacgtttat |
229 |
Q |
|
|
|||||||| ||||| |||||||||||||||||||||| |||||||||||||| |||||||| | || | |||||||||||||||||||||||||||| |
|
|
T |
47165452 |
ttttcagagttctcacgtcgagttcaataggaggcaagtcaatggggtcgctcgtgaattaggaaaggcagccccatctcatgctagctcccacgtttac |
47165353 |
T |
 |
Q |
230 |
gatgatgt |
237 |
Q |
|
|
| |||||| |
|
|
T |
47165352 |
ggtgatgt |
47165345 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 38998911 - 38998988
Alignment:
Q |
130 |
ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatc |
207 |
Q |
|
|
|||||| ||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| |||||| ||||||| |
|
|
T |
38998911 |
ttttcaaaactctcatgtcgagtttaataggaggcaagctaatggggtcgctcacgaattagcgagggtagccccatc |
38998988 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 37796609 - 37796716
Alignment:
Q |
130 |
ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatctcatgctagctcccacgtttat |
229 |
Q |
|
|
|||||| ||| ||||||||||||| |||||||||||||| |||| ||||||||| ||||||| |||||| |||||||| || ||||| || | ||||| |
|
|
T |
37796609 |
ttttcaaaacactcatgtcgagtttaataggaggcaagctaatgaggtcgctcacaaattagcgagggtagccccatctgatcctagccccaccatttat |
37796708 |
T |
 |
Q |
230 |
gatgatgt |
237 |
Q |
|
|
|||||||| |
|
|
T |
37796709 |
gatgatgt |
37796716 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 164
Target Start/End: Complemental strand, 26390956 - 26390800
Alignment:
Q |
8 |
tatgacaatgttgattttgttttggattgcaagtttgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggctt |
107 |
Q |
|
|
||||| ||||| || |||| |||||||| |||| |||| || |||||||| | |||||||| ||||| |||||||||||||| ||||| || |||| |
|
|
T |
26390956 |
tatgataatgtcgactttgctttggatttcaaggcacttgtagatcgttttaactgaaacctagaagatagtagtgaactaggttgcattatacaagctt |
26390857 |
T |
 |
Q |
108 |
gtaaatagttgttcgattgttattttcagaactctcatgtcgagttcaataggaggc |
164 |
Q |
|
|
||| | ||||||| | |||| |||| | ||||||| |||||||||||||||||||| |
|
|
T |
26390856 |
gtagacagttgtttgcttgtagtttttataactctcgtgtcgagttcaataggaggc |
26390800 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 182
Target Start/End: Original strand, 20916387 - 20916465
Alignment:
Q |
104 |
gcttgtaaatagttgttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctc |
182 |
Q |
|
|
|||||||||| ||| || ||| || ||||||||||||| |||| |||||||||||||||||||| |||| |||||||| |
|
|
T |
20916387 |
gcttgtaaattgttattagatagtagttttcagaactcttatgttgagttcaataggaggcaagcgaatgaggtcgctc |
20916465 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 182
Target Start/End: Original strand, 20925349 - 20925427
Alignment:
Q |
104 |
gcttgtaaatagttgttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctc |
182 |
Q |
|
|
|||||||||| ||| || ||| || ||||||||||||| |||| |||||||||||||||||||| |||| |||||||| |
|
|
T |
20925349 |
gcttgtaaattgttattagatagtagttttcagaactcttatgttgagttcaataggaggcaagcgaatgaggtcgctc |
20925427 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 32073664 - 32073607
Alignment:
Q |
137 |
aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagcta |
194 |
Q |
|
|
||||||||||||||||| | |||||||||||| |||| ||| |||||||||||||||| |
|
|
T |
32073664 |
aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta |
32073607 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 10346589 - 10346527
Alignment:
Q |
131 |
tttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagct |
193 |
Q |
|
|
||||||||||| ||||| |||||||| ||||||||||| ||| |||||||||| || |||||| |
|
|
T |
10346589 |
tttcagaactcgcatgtagagttcaacaggaggcaagcgaatagggtcgctcacgagttagct |
10346527 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 1017732 - 1017670
Alignment:
Q |
131 |
tttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagct |
193 |
Q |
|
|
||||||||||||||||| |||||||| |||||||||| ||| |||| ||||| || |||||| |
|
|
T |
1017732 |
tttcagaactctcatgttgagttcaaccggaggcaagcaaatagggtagctcacgagttagct |
1017670 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 25131140 - 25131086
Alignment:
Q |
130 |
ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcat |
184 |
Q |
|
|
||||| |||||||||||||||||||||||| | | ||| ||||||||||||||| |
|
|
T |
25131140 |
ttttctgaactctcatgtcgagttcaatagaaagtaagttaatggggtcgctcat |
25131086 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 220
Target Start/End: Original strand, 29237227 - 29237316
Alignment:
Q |
131 |
tttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatctcatgctagctcc |
220 |
Q |
|
|
||||| ||||| |||||||||| |||||| |||||||| |||| |||| || || |||||| |||| |||||| ||||||||||||| |
|
|
T |
29237227 |
tttcaaaactcacatgtcgagtgcaatagaaggcaagctaatgaggtcacttgcgagttagctcaggtagccccatgtcatgctagctcc |
29237316 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 43989490 - 43989258
Alignment:
Q |
4 |
tcattatgacaatgttgattttgttttggattgcaagtttgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcag |
103 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
43989490 |
tcattatgacaatgttgattttgttttggattgcaagtttgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcag |
43989391 |
T |
 |
Q |
104 |
gcttgtaaatagttgttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccc |
203 |
Q |
|
|
||||| | | | ||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| |
|
|
T |
43989390 |
gcttgcagacaattgttcgattg-tatttttagaacgctcatgtcgagttcaataggaggcaagccaatgaggtcgctcatgaattagttagggtagccc |
43989292 |
T |
 |
Q |
204 |
catctcatgctagctcccacgtttatgatgatgt |
237 |
Q |
|
|
|||||||||||||||||||||||||||||||||| |
|
|
T |
43989291 |
catctcatgctagctcccacgtttatgatgatgt |
43989258 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 237
Target Start/End: Complemental strand, 19316071 - 19315890
Alignment:
Q |
56 |
tttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtaaatagttgttcgattgttattttcagaactctcatgtcgagttca |
155 |
Q |
|
|
||||| ||||| ||| |||||| ||||| |||||||| ||||| || ||||||| ||||||||| | | |||||||||||||||||||||||||| |
|
|
T |
19316071 |
tttaagtcaaatgtagatgatagtagtgagctaggttgcattatacatgcttgtagatagttgtttgttaacagttttcagaactctcatgtcgagttca |
19315972 |
T |
 |
Q |
156 |
ataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatctcatgctagctcccacgtttatgatgatgt |
237 |
Q |
|
|
||||||||||||||||||| |||| |||||||||||| |||| ||||| || ||| ||||||||||| ||||||| |||| |
|
|
T |
19315971 |
ataggaggcaagccaatggagtcgttcatgaattagcacaggtagccccaccttatggtagctcccacgcttatgattatgt |
19315890 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 141 - 237
Target Start/End: Complemental strand, 43813267 - 43813171
Alignment:
Q |
141 |
ctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatctcatgctagctcccacgtttatgatgatgt |
237 |
Q |
|
|
||||||||||||||||||| || |||| ||||||||||| ||||||||||| ||||||| ||||||||||| ||||||| | ||||| ||||||||| |
|
|
T |
43813267 |
ctcatgtcgagttcaatagcagacaagtcaatggggtcgttcatgaattagttagggtagccccatctcatactagctctctcgtttttgatgatgt |
43813171 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 130 - 232
Target Start/End: Original strand, 1394129 - 1394232
Alignment:
Q |
130 |
ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggta-accccatctcatgctagctcccacgttta |
228 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||| |||||||| |||||||||||||| | || |
|
|
T |
1394129 |
ttttcagaactctcatgtcgagttcaataggaggcaagctaatggggtcgttcatgaattagcacaagtagtccccatctaatgctagctcccacatcta |
1394228 |
T |
 |
Q |
229 |
tgat |
232 |
Q |
|
|
|||| |
|
|
T |
1394229 |
tgat |
1394232 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 9633063 - 9633111
Alignment:
Q |
131 |
tttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcg |
179 |
Q |
|
|
||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
T |
9633063 |
tttcagaactctcatgtcgagttcaataggaggcaagtgaatggggtcg |
9633111 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 35096913 - 35096975
Alignment:
Q |
131 |
tttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagct |
193 |
Q |
|
|
||||||||||||||||||||||||||||| |||||||| ||| |||| ||||| || |||||| |
|
|
T |
35096913 |
tttcagaactctcatgtcgagttcaatagaaggcaagcaaatagggttgctcacgagttagct |
35096975 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 13200849 - 13200906
Alignment:
Q |
137 |
aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagcta |
194 |
Q |
|
|
||||||||||||||||||| |||||||||||| |||| ||| |||||||| ||||||| |
|
|
T |
13200849 |
aactctcatgtcgagttcattaggaggcaagcaaatgaggttgctcatgagttagcta |
13200906 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 47783000 - 47783057
Alignment:
Q |
137 |
aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagcta |
194 |
Q |
|
|
||||||||||||||||| | |||||||||||| |||| ||| |||||||||||||||| |
|
|
T |
47783000 |
aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta |
47783057 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 1479337 - 1479285
Alignment:
Q |
131 |
tttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctca |
183 |
Q |
|
|
||||||||||||||| ||||||||||||||||||||| ||||||||| |||| |
|
|
T |
1479337 |
tttcagaactctcatatcgagttcaataggaggcaagtaaatggggtcactca |
1479285 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 6969614 - 6969676
Alignment:
Q |
131 |
tttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagct |
193 |
Q |
|
|
|||||||||||||||||||| ||||||| |||| ||| |||||||||||||| || |||||| |
|
|
T |
6969614 |
tttcagaactctcatgtcgatttcaataagaggtaagtaaatggggtcgctcacgagttagct |
6969676 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 17283627 - 17283581
Alignment:
Q |
131 |
tttcagaactctcatgtcgagttcaataggaggcaagccaatggggt |
177 |
Q |
|
|
|||||||||||| ||||||||||||||||||||||| | |||||||| |
|
|
T |
17283627 |
tttcagaactcttatgtcgagttcaataggaggcaaacgaatggggt |
17283581 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 5124688 - 5124643
Alignment:
Q |
129 |
attttcagaactctcatgtcgagttcaataggaggcaagccaatgg |
174 |
Q |
|
|
|||||||||||||| |||||||||||||| |||||||||| ||||| |
|
|
T |
5124688 |
attttcagaactctaatgtcgagttcaatcggaggcaagctaatgg |
5124643 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 36469295 - 36469374
Alignment:
Q |
157 |
taggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatctcatgctagctcccacgtttatgatgatgt |
237 |
Q |
|
|
|||||||||||| ||||||||| | | |||||| ||||||||||||||||| ||||||||| || ||||||||||||| |
|
|
T |
36469295 |
taggaggcaagctaatggggtcacg-aggaattaataagggtaaccccatctcaagctagctcctacatttatgatgatgt |
36469374 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 16889147 - 16889209
Alignment:
Q |
131 |
tttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagct |
193 |
Q |
|
|
||||||||||||||||| ||||||| | |||||||||| ||| |||| ||||| || |||||| |
|
|
T |
16889147 |
tttcagaactctcatgttgagttcagtcggaggcaagcaaatagggtagctcacgagttagct |
16889209 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 37857076 - 37857014
Alignment:
Q |
131 |
tttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagct |
193 |
Q |
|
|
||||||||||||||||| |||||||| ||||||||||| ||| | || ||||| || |||||| |
|
|
T |
37857076 |
tttcagaactctcatgttgagttcaacaggaggcaagcaaatagagtagctcacgagttagct |
37857014 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 942571 - 942804
Alignment:
Q |
4 |
tcattatgacaatgttgattttgttttggattgcaagtttgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcag |
103 |
Q |
|
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
T |
942571 |
tcattatgacaatgttgattttgttttggattccaagtctgttgttgaacattttaagtcaaacctaggtgatagtagtgaactaggttgtattattcag |
942670 |
T |
 |
Q |
104 |
gcttgtaaatagttgttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccc |
203 |
Q |
|
|
||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
T |
942671 |
gcttgtaggcagttgttcgattgtaattttcagaactctaatgtcgagttcaataggaggcaagccaatggggtcgctcgtgaattagctaggacaaccc |
942770 |
T |
 |
Q |
204 |
catctcatgctagctcccacgtttatgatgatgt |
237 |
Q |
|
|
|||||||||||| |||||||||||| |||||||| |
|
|
T |
942771 |
catctcatgctatctcccacgtttacgatgatgt |
942804 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 4513076 - 4513183
Alignment:
Q |
130 |
ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatctcatgctagctcccacgtttat |
229 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||| |||||| |
|
|
T |
4513076 |
ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctaatgaattagctagggtagccccatctcatactagctcccatgtttat |
4513175 |
T |
 |
Q |
230 |
gatgatgt |
237 |
Q |
|
|
||| |||| |
|
|
T |
4513176 |
gataatgt |
4513183 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 19047092 - 19047178
Alignment:
Q |
131 |
tttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatctcatgctagc |
217 |
Q |
|
|
||||| ||||||||||||||||| |||||||||||||| |||| ||||||||| |||||||| |||||| ||| |||| || ||||| |
|
|
T |
19047092 |
tttcaaaactctcatgtcgagtttaataggaggcaagctaatgtggtcgctcacgaattagcgagggtagccctatctgatcctagc |
19047178 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 15950809 - 15950866
Alignment:
Q |
137 |
aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagcta |
194 |
Q |
|
|
||||||||||||||||| | |||||||||||| |||| ||| |||||||||||||||| |
|
|
T |
15950809 |
aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta |
15950866 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 12125820 - 12125927
Alignment:
Q |
130 |
ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatctcatgctagctcccacgtttat |
229 |
Q |
|
|
||||||||| |||||||| | ||||||| ||||||||| |||| || |||||||||||||| ||| || ||||||||||||||| ||| || ||| |
|
|
T |
12125820 |
ttttcagaattctcatgttcaattcaatatgaggcaagctaatgaagtggctcatgaattagcacatgtagcctcatctcatgctagcttccatgtctat |
12125919 |
T |
 |
Q |
230 |
gatgatgt |
237 |
Q |
|
|
|||||||| |
|
|
T |
12125920 |
gatgatgt |
12125927 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 235
Target Start/End: Complemental strand, 13757607 - 13757503
Alignment:
Q |
131 |
tttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatctcatgctagctcccacgtttatg |
230 |
Q |
|
|
||||| ||||||||||| ||||| |||| || |||| | |||| ||||||||| |||||||||||| || | |||| | || |||||||| | |||||| |
|
|
T |
13757607 |
tttcaaaactctcatgttgagtttaataagaagcaaactaatgaggtcgctcacgaattagctaggatagctccatataatcctagctccaatttttatg |
13757508 |
T |
 |
Q |
231 |
atgat |
235 |
Q |
|
|
||||| |
|
|
T |
13757507 |
atgat |
13757503 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 20731771 - 20731689
Alignment:
Q |
155 |
aataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatctcatgctagctcccacgtttatgatgatgt |
237 |
Q |
|
|
|||||||||||||| || || | |||||||||||||| |||||||||| || | ||||| ||| |||| |||| |||||||| |
|
|
T |
20731771 |
aataggaggcaagctaacggagatgctcatgaattagcgagggtaacccaatgtgatgctcgcttccacatttaagatgatgt |
20731689 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 21698719 - 21698776
Alignment:
Q |
137 |
aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagcta |
194 |
Q |
|
|
||||||||||||||||| | |||||||||||| |||| ||| ||||||| ||||||| |
|
|
T |
21698719 |
aactctcatgtcgagtttattaggaggcaagcaaatgaggttgctcatgttttagcta |
21698776 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 30063723 - 30063666
Alignment:
Q |
137 |
aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagcta |
194 |
Q |
|
|
||||||||||||||||| | |||||||||||| |||| ||| ||||||| ||||||| |
|
|
T |
30063723 |
aactctcatgtcgagtttattaggaggcaagcaaatgaggttgctcatgttttagcta |
30063666 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 43 - 237
Target Start/End: Complemental strand, 41197550 - 41197356
Alignment:
Q |
43 |
tgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtaaatagttgttcgattgttattttcagaactct |
142 |
Q |
|
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| || | |||||||||||||| |||||||||||||| |
|
|
T |
41197550 |
tgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattatttaggcttatagacagttgttcgattgtaattttcagaactct |
41197451 |
T |
 |
Q |
143 |
catgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatctcatgctagctcccacgtttatgatgatgt |
237 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
T |
41197450 |
tatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagctcccacgtttatgatgatgt |
41197356 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 36779622 - 36779403
Alignment:
Q |
15 |
atgttgattttgttttggattgcaagtttgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtaaata |
114 |
Q |
|
|
||||||||||| ||||||||| ||||| | |||||||||||||||||||||||||| ||| || ||||||||||||||||||||| ||||||||| | |
|
|
T |
36779622 |
atgttgattttattttggattccaagtctattgttgaacgttttaattcaaacctaattgagagtagtgaactaggttgtattattaaggcttgtaggca |
36779523 |
T |
 |
Q |
115 |
gttgttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatctcatgct |
214 |
Q |
|
|
|||||| | |||| | ||||||||||||||||||||| ||||||||||||||||||| | ||| |||||| ||||||||||||| ||||||| ||| | |
|
|
T |
36779522 |
gttgtttggttgtaa--ttcagaactctcatgtcgagtacaataggaggcaagccaatagtgtcactcatggattagctagggtagtcccatct-atgtt |
36779426 |
T |
 |
Q |
215 |
agctcccacgtttatgatgatgt |
237 |
Q |
|
|
||||||||||| ||||||||||| |
|
|
T |
36779425 |
agctcccacgtctatgatgatgt |
36779403 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 114 - 237
Target Start/End: Complemental strand, 30376550 - 30376427
Alignment:
Q |
114 |
agttgttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatctcatgc |
213 |
Q |
|
|
|||||||||||| | ||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| || |||||||||| |
|
|
T |
30376550 |
agttgttcgattataattttcaaaactcttatgtcgagttcaataggaggcaagccaatagggtcgctcatgaattagctacggtagcctcatctcatgc |
30376451 |
T |
 |
Q |
214 |
tagctcccacgtttatgatgatgt |
237 |
Q |
|
|
||||||| |||||||||||||||| |
|
|
T |
30376450 |
tagctccaacgtttatgatgatgt |
30376427 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 130 - 237
Target Start/End: Complemental strand, 12714954 - 12714847
Alignment:
Q |
130 |
ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatctcatgctagctcccacgtttat |
229 |
Q |
|
|
|||||||||||||||||| | |||||| |||| |||| | |||||||||| |||| ||||||| |||||||||||| ||||||||||| || |||||| |
|
|
T |
12714954 |
ttttcagaactctcatgttgggttcaaaaggaagcaacctaatggggtcgttcataaattagcagaggtaaccccatcacatgctagctctcatgtttat |
12714855 |
T |
 |
Q |
230 |
gatgatgt |
237 |
Q |
|
|
|||||||| |
|
|
T |
12714854 |
gatgatgt |
12714847 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 130 - 237
Target Start/End: Complemental strand, 12776185 - 12776078
Alignment:
Q |
130 |
ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatctcatgctagctcccacgtttat |
229 |
Q |
|
|
|||||||||||||||||| | |||||| |||| |||| | |||||||||| |||| ||||||| |||||||||||| ||||||||||| || |||||| |
|
|
T |
12776185 |
ttttcagaactctcatgttgggttcaaaaggaagcaacctaatggggtcgttcataaattagcagaggtaaccccatcacatgctagctctcatgtttat |
12776086 |
T |
 |
Q |
230 |
gatgatgt |
237 |
Q |
|
|
|||||||| |
|
|
T |
12776085 |
gatgatgt |
12776078 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 12378660 - 12378608
Alignment:
Q |
185 |
gaattagctagggtaaccccatctcatgctagctcccacgtttatgatgatgt |
237 |
Q |
|
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
T |
12378660 |
gaattagctagggtagccccatctcatgctagctcccacgtttatgatgatgt |
12378608 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 236
Target Start/End: Original strand, 34905529 - 34905685
Alignment:
Q |
80 |
agtgaactaggttgtattattcaggcttgtaaatagttgttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcg |
179 |
Q |
|
|
||||| ||||||||| |||| || ||||||| | ||||||| | | | ||||||||||||| ||| |||||||||||||| ||| |||||| ||||| |
|
|
T |
34905529 |
agtgagctaggttgtgttatacatgcttgtagacagttgtttgttaatagttttcagaactcttgtgttgagttcaataggagacaaaccaatgaggtcg |
34905628 |
T |
 |
Q |
180 |
ctcatgaattagctagggtaaccccatctcatgctagctcccacgtttatgatgatg |
236 |
Q |
|
|
||||||||||||| ||| ||| ||||||||||| |||||| ||||| ||||||| |
|
|
T |
34905629 |
ctcatgaattagcccaagtagcccgatctcatgctaactcccaagtttacgatgatg |
34905685 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 34525 - 34578
Alignment:
Q |
130 |
ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctca |
183 |
Q |
|
|
|||||||||||||||||||||||| ||||||| |||||||||| ||||||||| |
|
|
T |
34525 |
ttttcagaactctcatgtcgagtttaataggaagcaagccaatatggtcgctca |
34578 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 14857028 - 14856952
Alignment:
Q |
131 |
tttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatc |
207 |
Q |
|
|
||||| ||||||||||||||||| |||| ||||||| | |||| | |||||||||||||||||| || | ||||||| |
|
|
T |
14857028 |
tttcaaaactctcatgtcgagtttaatatgaggcaaacaaatgtgatcgctcatgaattagctaaggcatccccatc |
14856952 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 29985435 - 29985530
Alignment:
Q |
133 |
tcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatctcatgctagctcccacgttta |
228 |
Q |
|
|
||||||||||||||||||||||||||| || ||||| |||| ||||| ||| || |||||| |||| ||| | ||||| |||||||||| |||| |
|
|
T |
29985435 |
tcagaactctcatgtcgagttcaatagaagacaagctaatgaggtcgttcacgagttagctcaggtagccctaggtcatgttagctcccacattta |
29985530 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 19609213 - 19609156
Alignment:
Q |
137 |
aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagcta |
194 |
Q |
|
|
||||||||||||||||| | |||||||||||| |||| ||| ||||||| ||||||| |
|
|
T |
19609213 |
aactctcatgtcgagtttattaggaggcaagcaaatgaggttgctcatgttttagcta |
19609156 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 39714874 - 39714935
Alignment:
Q |
176 |
gtcgctcatgaattagctagggtaaccccatctcatgctagctcccacgtttatgatgatgt |
237 |
Q |
|
|
|||||||||||||||| ||| ||| ||||| || || |||||| ||||||||||||||||| |
|
|
T |
39714874 |
gtcgctcatgaattagttagtgtagccccaccttatattagctctcacgtttatgatgatgt |
39714935 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 23820401 - 23820634
Alignment:
Q |
4 |
tcattatgacaatgttgattttgttttggattgcaagtttgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcag |
103 |
Q |
|
|
|||||||||| ||||| ||||||||||||||| ||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
T |
23820401 |
tcattatgaccatgttaattttgttttggattccaagtctgttgttgtacactttaattcaaacctaggtgatagtagtgaactaggttgtatcattcag |
23820500 |
T |
 |
Q |
104 |
gcttgtaaatagttgttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccc |
203 |
Q |
|
|
| ||||| ||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
T |
23820501 |
gtttgtaggcagttgtttgattgtaattttcagaactctcatatcgagttcaataggaggcaagccaatggggtcgctcatgaattagatagggtagatc |
23820600 |
T |
 |
Q |
204 |
catctcatgctagctcccacgtttatgatgatgt |
237 |
Q |
|
|
|||||||||||||||||||| ||||||||||||| |
|
|
T |
23820601 |
catctcatgctagctcccacatttatgatgatgt |
23820634 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 24808980 - 24808771
Alignment:
Q |
8 |
tatgacaatgttgattttgttttggattgcaagtttgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggctt |
107 |
Q |
|
|
|||||| |||||||||||||||| |||| ||||| ||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
T |
24808980 |
tatgaccatgttgattttgttttagattccaagtctgttgttgatcgttttaattcaaacctagttgatagtagtgaactaggttgtattattcaggctt |
24808881 |
T |
 |
Q |
108 |
gtaaatagttgttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatc |
207 |
Q |
|
|
||| ||||||| | |||| ||| | ||||||||||||||||||||||||||| | ||||||||||||||||| || ||||||| |
|
|
T |
24808880 |
gtaggcagttgtttggttgt---------aac--------ctagttcaataggaggcaagccaatggggccactcatgaattagctaggatagccccatc |
24808798 |
T |
 |
Q |
208 |
tcatgctagctcccacgtttatgatgatgt |
237 |
Q |
|
|
||||||||| |||||||||||||||||| |
|
|
T |
24808797 |
tcatgctag---ccacgtttatgatgatgt |
24808771 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 21118399 - 21118505
Alignment:
Q |
130 |
ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatctcatgctagctcccacgtttat |
229 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||| |||| |||| |||||| |||||||||||| | |||||| |||||||||| |||||||| |
|
|
T |
21118399 |
ttttcagaactctcatgtcgagttcaataggaggcaagctaatgaggtcactcatg-gttagctagggtagcaccatctattgctagctccaacgtttat |
21118497 |
T |
 |
Q |
230 |
gatgatgt |
237 |
Q |
|
|
||| |||| |
|
|
T |
21118498 |
gataatgt |
21118505 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 134 - 239
Target Start/End: Complemental strand, 40901908 - 40901803
Alignment:
Q |
134 |
cagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatctcatgctagctcccacgtttatgatg |
233 |
Q |
|
|
|||||||||||||||||||| |||||||||||| | ||| |||||||||||||||| | |||| | |||||||||||||||||||| | ||||||| |
|
|
T |
40901908 |
cagaactctcatgtcgagttgaataggaggcaaactaatatggtcgctcatgaattaacacaggtagctccatctcatgctagctcccatatctatgatg |
40901809 |
T |
 |
Q |
234 |
atgtcc |
239 |
Q |
|
|
|||||| |
|
|
T |
40901808 |
atgtcc |
40901803 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 12980735 - 12980787
Alignment:
Q |
131 |
tttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctca |
183 |
Q |
|
|
|||||||||||||||||||||||||| ||||||||| | |||||||||||||| |
|
|
T |
12980735 |
tttcagaactctcatgtcgagttcaacaggaggcaaacgaatggggtcgctca |
12980787 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 20492489 - 20492547
Alignment:
Q |
135 |
agaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagct |
193 |
Q |
|
|
||||||||||| ||||||| |||||||||||||| ||| |||||||||| ||||||||| |
|
|
T |
20492489 |
agaactctcatctcgagtttaataggaggcaagcgaatagggtcgctcacgaattagct |
20492547 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 29526837 - 29526894
Alignment:
Q |
137 |
aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagcta |
194 |
Q |
|
|
||||||||||||||||| | |||||||||||| |||| ||| |||||||||||||||| |
|
|
T |
29526837 |
aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta |
29526894 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 10325166 - 10325110
Alignment:
Q |
137 |
aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagct |
193 |
Q |
|
|
||||||||||||||||| |||||||||||| | |||| |||||||||||| |||||| |
|
|
T |
10325166 |
aactctcatgtcgagtttaataggaggcaaacgaatgaggtcgctcatgagttagct |
10325110 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 31957100 - 31957050
Alignment:
Q |
130 |
ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgc |
180 |
Q |
|
|
||||||||||| ||||||||| |||||||||||||||| |||||| |||| |
|
|
T |
31957100 |
ttttcagaactatcatgtcgaattcaataggaggcaagttaatgggatcgc |
31957050 |
T |
 |
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HSP Overview ] [
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Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 665047 - 664990
Alignment:
Q |
137 |
aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagcta |
194 |
Q |
|
|
||||||||||||||||| | |||||| ||||| |||| ||| || ||||||||||||| |
|
|
T |
665047 |
aactctcatgtcgagtttattaggagacaagcaaatgaggttgcacatgaattagcta |
664990 |
T |
 |
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HSP Overview ] [
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Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 21588208 - 21588151
Alignment:
Q |
137 |
aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagcta |
194 |
Q |
|
|
||||||||||||||||| | |||||||||| | |||| ||| || ||||||||||||| |
|
|
T |
21588208 |
aactctcatgtcgagtttattaggaggcaatcaaatgaggttgcacatgaattagcta |
21588151 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 8321252 - 8321192
Alignment:
Q |
131 |
tttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattag |
191 |
Q |
|
|
||||| |||||||||||||| || |||| ||| ||| | || ||||||||||||||||||| |
|
|
T |
8321252 |
tttcaaaactctcatgtcgaatttaatacgagacaaacaaacggggtcgctcatgaattag |
8321192 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0041 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 134 - 239
Target Start/End: Original strand, 48110 - 48215
Alignment:
Q |
134 |
cagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtaaccccatctcatgctagctcccacgtttatgatg |
233 |
Q |
|
|
|||||||||||||||||||| |||||||||||| | ||| |||||||||||||||| | |||| | |||||||||||||||||||| | ||||||| |
|
|
T |
48110 |
cagaactctcatgtcgagttgaataggaggcaaactaatatggtcgctcatgaattaacacaggtagctccatctcatgctagctcccatatctatgatg |
48209 |
T |
 |
Q |
234 |
atgtcc |
239 |
Q |
|
|
|||||| |
|
|
T |
48210 |
atgtcc |
48215 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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