View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0945_low_66 (Length: 252)

Name: NF0945_low_66
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0945_low_66
NF0945_low_66
[»] chr3 (7 HSPs)
chr3 (77-251)||(50241825-50241999)
chr3 (77-251)||(52753987-52754161)
chr3 (77-246)||(14233181-14233342)
chr3 (97-246)||(39184510-39184652)
chr3 (115-233)||(34850175-34850294)
chr3 (97-246)||(40058122-40058264)
chr3 (77-157)||(2251420-2251500)
[»] chr5 (5 HSPs)
chr5 (77-251)||(9025337-9025511)
chr5 (97-246)||(27593229-27593371)
chr5 (115-151)||(19319242-19319278)
chr5 (77-151)||(30326591-30326665)
chr5 (97-157)||(23570198-23570258)
[»] chr2 (1 HSPs)
chr2 (77-251)||(31965371-31965545)
[»] chr1 (4 HSPs)
chr1 (77-251)||(49882187-49882360)
chr1 (158-246)||(15530523-15530612)
chr1 (77-150)||(19102313-19102386)
chr1 (77-157)||(21467282-21467362)
[»] chr4 (2 HSPs)
chr4 (77-250)||(314709-314882)
chr4 (77-225)||(6554948-6555096)
[»] chr8 (5 HSPs)
chr8 (97-251)||(41526578-41526732)
chr8 (165-246)||(45245663-45245745)
chr8 (77-246)||(23684429-23684591)
chr8 (77-157)||(361461-361541)
chr8 (93-149)||(12159713-12159769)
[»] scaffold0211 (1 HSPs)
scaffold0211 (77-236)||(16677-16836)
[»] scaffold0114 (1 HSPs)
scaffold0114 (110-251)||(37424-37565)
[»] scaffold0284 (1 HSPs)
scaffold0284 (168-251)||(447-530)
[»] chr6 (1 HSPs)
chr6 (97-197)||(23408840-23408938)


Alignment Details
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 77 - 251
Target Start/End: Complemental strand, 50241999 - 50241825
Alignment:
Q  77 gagtgtgtgcttttaccacaagagtatatggaataatatgagttgctggtaattttgtgggattgttgaagaattaggagttttggggtaattattttac 176  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  50241999 gagtgtgtgcttttaccacgagagtatatggaattatatgagttgctggtaattttgtgggattgttgaagaattaggagttttggagtaattattttac 50241900  T
Q  177 gacaaattagactcaattaaagaatcgcaacatcaatttaaattttttaataagtatgtttttgtcaactcagta 251  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  50241899 gacaaattagactcaattaaagaatcgcaacatcaatttaaatattttaataagtatgtttttgtcaactcagta 50241825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 77 - 251
Target Start/End: Complemental strand, 52754161 - 52753987
Alignment:
Q  77 gagtgtgtgcttttaccacaagagtatatggaataatatgagttgctggtaattttgtgggattgttgaagaattaggagttttggggtaattattttac 176  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||     
T  52754161 gagtgtgtgcttttaccatgagagtatatggaataatgtgagttgctggtaattttgggggattgttgaagaattaggatttttggggtaattattttat 52754062  T
Q  177 gacaaattagactcaattaaagaatcgcaacatcaatttaaattttttaataagtatgtttttgtcaactcagta 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  52754061 gacaaattagactcaattaaagaatcgcaacatcaatttaaatttttcaataagtaggtttttgtcaactcagta 52753987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 246
Target Start/End: Complemental strand, 14233342 - 14233181
Alignment:
Q  77 gagtgtgtgcttttaccacaagagtatatggaataatatgagttgctggtaattttgtgggattgttgaagaattaggagttttggggtaattattttac 176  Q
    ||||||||||||| |||| ||||||||||| |||| | |  ||||||||||||||| |||| |||||||||||        ||||| ||||||| | |||    
T  14233342 gagtgtgtgctttgaccataagagtatatgaaatattgttcgttgctggtaattttatgggtttgttgaagaa--------tttggagtaattaatatac 14233251  T
Q  177 gacaaattagactcaattaaagaatcgcaacatcaatttaaattttttaataagtatgt-ttttgtcaact 246  Q
     |||||||| |||||| |||| ||| |||||| ||||||||| |||| |||||| |||| |||||||||||    
T  14233250 cacaaattaaactcaaataaaaaattgcaacaccaatttaaa-ttttaaataagcatgtattttgtcaact 14233181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 246
Target Start/End: Complemental strand, 39184652 - 39184510
Alignment:
Q  97 agagtatatggaataatatgagttgctggtaattttgtgggattgttgaagaattaggagttttggggtaattattttacgacaaattagactcaattaa 196  Q
    |||||||||| |||| | |  ||||| |||||||||||||| ||||||||||||| ||| |        ||||| | ||| |||||||||||||||||||    
T  39184652 agagtatatgaaatattgttcgttgccggtaattttgtgggtttgttgaagaatttggaat--------aattaatataccacaaattagactcaattaa 39184561  T
Q  197 agaatcgcaacatcaatttaaattttttaataagtatgt-ttttgtcaact 246  Q
    | ||| |||||| ||||||||| |||  |||||| |||| |||||||||||    
T  39184560 aaaattgcaacaccaatttaaaatttcaaataagcatgtattttgtcaact 39184510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 233
Target Start/End: Original strand, 34850175 - 34850294
Alignment:
Q  115 tgagttgctggtaattttgtgggattgttgaagaattaggag-ttttggggtaattattttacg-acaaattagactcaattaaagaatcgcaacatcaa 212  Q
    ||||||||| | |||||||  ||  |||||||| |||||||| ||||||||||||||||||||| | ||| |||||||||||||| || ||  ||||||     
T  34850175 tgagttgcttgcaattttgcaggtatgttgaaggattaggagattttggggtaattattttacgaaaaaaatagactcaattaaa-aaacgtcacatcat 34850273  T
Q  213 tttaaattttttaataagtat 233  Q
    |||||| ||| ||||||||||    
T  34850274 tttaaaatttctaataagtat 34850294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 246
Target Start/End: Complemental strand, 40058264 - 40058122
Alignment:
Q  97 agagtatatggaataatatgagttgctggtaattttgtgggattgttgaagaattaggagttttggggtaattattttacgacaaattagactcaattaa 196  Q
    |||||||||| |||| | |  ||||| |||||||||||||| ||||||||||||| ||| |        ||||| | ||| | |||||||||||||||||    
T  40058264 agagtatatgtaatattgttcgttgcgggtaattttgtgggtttgttgaagaatttggaat--------aattaatataccataaattagactcaattaa 40058173  T
Q  197 agaatcgcaacatcaatttaaattttttaataagtatgt-ttttgtcaact 246  Q
    | ||| |||||| ||||||||| |||  |||||| |||| |||||||||||    
T  40058172 aaaattgcaacaccaatttaaaatttcaaataagcatgtattttgtcaact 40058122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 2251500 - 2251420
Alignment:
Q  77 gagtgtgtgcttttaccacaagagtatatggaataatatgagttgctggtaattttgtgggattgttgaagaattaggagt 157  Q
    ||||||||| ||| ||||  ||||||||||||||| | |  ||||||| ||||||| |||| || |||||||||| |||||    
T  2251500 gagtgtgtgttttgaccatgagagtatatggaatattgttcgttgctgataattttatgggtttcttgaagaatttggagt 2251420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 77 - 251
Target Start/End: Complemental strand, 9025511 - 9025337
Alignment:
Q  77 gagtgtgtgcttttaccacaagagtatatggaataatatgagttgctggtaattttgtgggattgttgaagaattaggagttttggggtaattattttac 176  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9025511 gagtgtgtgcttttaccatgagagtatatggaataatgtgagttgctggtaattttgtgggattgttgaagaattaggagttttggggtaattattttac 9025412  T
Q  177 gacaaattagactcaattaaagaatcgcaacatcaatttaaattttttaataagtatgtttttgtcaactcagta 251  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9025411 gacaaattagactcaattaaagaattgcaacatcgatttaaattttttaataagtatgtttttgtcaactcagta 9025337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 246
Target Start/End: Original strand, 27593229 - 27593371
Alignment:
Q  97 agagtatatggaataatatgagttgctggtaattttgtgggattgttgaagaattaggagttttggggtaattattttacgacaaattagactcaattaa 196  Q
    |||||||||| |||| | |  ||||| |||||||||||||| ||||||||||||| ||| |        ||||| | ||| |||||||||||||||||||    
T  27593229 agagtatatgaaatattgttcgttgcgggtaattttgtgggtttgttgaagaatttggaat--------aattaatataccacaaattagactcaattaa 27593320  T
Q  197 agaatcgcaacatcaatttaaattttttaataagtatgt-ttttgtcaact 246  Q
    | ||| |||||| ||||||||| |||  |||||| |||| |||||||||||    
T  27593321 aaaattgcaacaccaatttaaaatttcaaataagcatgtattttgtcaact 27593371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 19319242 - 19319278
Alignment:
Q  115 tgagttgctggtaattttgtgggattgttgaagaatt 151  Q
    ||||||||||||||||||||||| |||||||||||||    
T  19319242 tgagttgctggtaattttgtgggtttgttgaagaatt 19319278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 30326591 - 30326665
Alignment:
Q  77 gagtgtgtgcttttaccacaagagtatatggaataatatgagttgctggtaattttgtgggattgttgaagaatt 151  Q
    ||||||||||||| |||   ||||||||||||||| | |  ||||||||||||||| |||| || ||||||||||    
T  30326591 gagtgtgtgctttgaccgtgagagtatatggaatattgtttgttgctggtaattttatgggtttcttgaagaatt 30326665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 23570198 - 23570258
Alignment:
Q  97 agagtatatggaataatatgagttgctggtaattttgtgggattgttgaagaattaggagt 157  Q
    ||||||||||||||| | |  ||||||||||||||| |||| || |||||||||| |||||    
T  23570198 agagtatatggaatattgttcgttgctggtaattttatgggtttcttgaagaatttggagt 23570258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 77 - 251
Target Start/End: Original strand, 31965371 - 31965545
Alignment:
Q  77 gagtgtgtgcttttaccacaagagtatatggaataatatgagttgctggtaattttgtgggattgttgaagaattaggagttttggggtaattattttac 176  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31965371 gagtgtgtgcttttaccatgagagtatatggaataatgtgagttgctcgtaattttgtgggattgttgaagaattaggagttttggggtaattattttac 31965470  T
Q  177 gacaaattagactcaattaaagaatcgcaacatcaatttaaattttttaataagtatgtttttgtcaactcagta 251  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31965471 gacaaattagattcaattaaagaatcgcaacatcaatttaaattttttaataagtatgtttttgtcaactcagta 31965545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 77 - 251
Target Start/End: Complemental strand, 49882360 - 49882187
Alignment:
Q  77 gagtgtgtgcttttaccacaagagtatatggaataatatgagttgctggtaattttgtgggattgttgaagaattaggagttttggggtaattattttac 176  Q
    |||||||||||||||||  | |||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  49882360 gagtgtgtgcttttacctga-gagtatatggaataatgtgagttgctggtaattttgcgggattgttgaagaattaagagttttggggtaattattttac 49882262  T
Q  177 gacaaattagactcaattaaagaatcgcaacatcaatttaaattttttaataagtatgtttttgtcaactcagta 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49882261 gacaaattagactcaattaaagaatcgcaacatcaatttaaattttttaataagtatgtttttgtcaactcagta 49882187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 246
Target Start/End: Complemental strand, 15530612 - 15530523
Alignment:
Q  158 tttggggtaattattttacgacaaattagactcaattaaagaatcgcaacatcaatttaaattttttaataagtatgt-ttttgtcaact 246  Q
    ||||| ||||||| | ||| | ||||||||||||| |||| ||| |||||| ||||||||| |||| |||||| |||| |||||||||||    
T  15530612 tttggagtaattaatataccaaaaattagactcaaataaaaaattgcaacaccaatttaaaattttaaataagcatgtattttgtcaact 15530523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 19102313 - 19102386
Alignment:
Q  77 gagtgtgtgcttttaccacaagagtatatggaataatatgagttgctggtaattttgtgggattgttgaagaat 150  Q
    ||||||||||||| |||   ||||||||||||||| | |  ||||||||||||||| |||| || |||||||||    
T  19102313 gagtgtgtgctttgaccgtgagagtatatggaatattgttcgttgctggtaattttatgggtttcttgaagaat 19102386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 21467282 - 21467362
Alignment:
Q  77 gagtgtgtgcttttaccacaagagtatatggaataatatgagttgctggtaattttgtgggattgttgaagaattaggagt 157  Q
    ||||||||||||| |||   ||||||||||||||| | |  ||||||| ||||||| |||| || |||||||||| |||||    
T  21467282 gagtgtgtgctttgaccgtgagagtatatggaatattgttcgttgctgataattttatgggtttcttgaagaatttggagt 21467362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 77 - 250
Target Start/End: Complemental strand, 314882 - 314709
Alignment:
Q  77 gagtgtgtgcttttaccacaagagtatatggaataatatgagttgctggtaattttgtgggattgttgaagaattaggagttttggggtaattattttac 176  Q
    |||||||||||||| |||  ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  314882 gagtgtgtgctttttccatgagagtatgtggaataatgtgagttgctggtaattttgtgggattgttgaagaattaggagttttggggtaattattttac 314783  T
Q  177 gacaaattagactcaattaaagaatcgcaacatcaatttaaattttttaataagtatgtttttgtcaactcagt 250  Q
    || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  314782 gataaattagactcaattaaagaattgcaacatcaatttaaattttttaataagtatgtttttgtcaattcagt 314709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 77 - 225
Target Start/End: Complemental strand, 6555096 - 6554948
Alignment:
Q  77 gagtgtgtgcttttaccacaagagtatatggaataatatgagttgctggtaattttgtgggattgttgaagaattaggagttttggggtaattattttac 176  Q
    |||||| |||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6555096 gagtgtatgcttttaccatgagagtatatggaataatgtgagttgctggtaattttgtgggattgttgaagaattaggagttttggggtaattattttac 6554997  T
Q  177 gacaaattagactcaattaaagaatcgcaacatcaatttaaatttttta 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6554996 gacaaattagactcaattaaagaatcgcaacatcaatttaaatttttta 6554948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 97 - 251
Target Start/End: Original strand, 41526578 - 41526732
Alignment:
Q  97 agagtatatggaataatatgagttgctggtaattttgtgggattgttgaagaattaggagttttggggtaattattttacgacaaattagactcaattaa 196  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  41526578 agagtatatggaataatgtgagttgctggtaattttgtggaattgttgaagaattaggagtttttgggtaattattttacgataaattagactcaattaa 41526677  T
Q  197 agaatcgcaacatcaatttaaattttttaataagtatgtttttgtcaactcagta 251  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41526678 agaatcgcaacatcaatttaaattttttaataagtatatttttgtcaactcagta 41526732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 246
Target Start/End: Complemental strand, 45245745 - 45245663
Alignment:
Q  165 taattattttacgacaaattagactcaattaaagaatcgcaacatcaatttaaattttttaataagtatgt-ttttgtcaact 246  Q
    |||||| | ||| |||||||||||||||||||| ||| |||||| ||||||||| |||| |||||| |||| |||||||||||    
T  45245745 taattaatataccacaaattagactcaattaaaaaattgcaacaccaatttaaaattttaaataagcatgtattttgtcaact 45245663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 246
Target Start/End: Complemental strand, 23684591 - 23684429
Alignment:
Q  77 gagtgtgtgcttttaccacaagagtatatggaataatatgagttgctggtaattttgtgggattgttgaagaattaggagttttggggtaattattttac 176  Q
    ||||||||||||| |||   |||||||||| |||| | |  ||||||||||||||| |||| || |||||||||| |||||        ||||| | |||    
T  23684591 gagtgtgtgctttgaccgtgagagtatatgaaatattgttcgttgctggtaattttatgggttttttgaagaatttggagt--------aattaatatac 23684500  T
Q  177 gacaaattagactcaattaaagaatcgcaacatcaatttaaattttttaataagtatgt-ttttgtcaact 246  Q
     | ||||||||||||| |||| ||| |||||| ||||||||| |||| |||||| |||| |||||||||||    
T  23684499 caaaaattagactcaaataaaaaattgcaacaccaatttaaaattttaaataagcatgtattttgtcaact 23684429  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 361541 - 361461
Alignment:
Q  77 gagtgtgtgcttttaccacaagagtatatggaataatatgagttgctggtaattttgtgggattgttgaagaattaggagt 157  Q
    ||||||||||||| |||   ||||||||||||||| | |  ||||||||||||||| |||| || |||||||||| |||||    
T  361541 gagtgtgtgctttgaccgtgagagtatatggaatattgttcgttgctggtaattttatgggtttcttgaagaatttggagt 361461  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 12159769 - 12159713
Alignment:
Q  93 cacaagagtatatggaataatatgagttgctggtaattttgtgggattgttgaagaa 149  Q
    |||||||||||||||||||||  |||||| ||||||| || || | |||||||||||    
T  12159769 cacaagagtatatggaataatgagagttgttggtaatattatgagtttgttgaagaa 12159713  T

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Target: scaffold0211 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 77 - 236
Target Start/End: Original strand, 16677 - 16836
Alignment:
Q  77 gagtgtgtgcttttaccacaagagtatatggaataatatgagttgctggtaattttgtgggattgttgaagaattaggagttttggggtaattattttac 176  Q
    |||||||||||||||  |  ||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  16677 gagtgtgtgcttttataatgagagtatatggaataatgtgagttgctggtaattttatgagattgttgaagaattaggagttttggggtaattattttac 16776  T
Q  177 gacaaattagactcaattaaagaatcgcaacatcaatttaaattttttaataagtatgtt 236  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||    
T  16777 gacaaattagactcaattcaagaatcgcaacatcaatttaattttttttataagtatgtt 16836  T

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Target: scaffold0114 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 110 - 251
Target Start/End: Complemental strand, 37565 - 37424
Alignment:
Q  110 taatatgagttgctggtaattttgtgggattgttgaagaattaggagttttggggtaattattttacgacaaattagactcaattaaagaatcgcaacat 209  Q
    |||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  37565 taatgtgagttcctagtaattttgtgggattgttgaagaattaggagttttggggtaattattttacgacaaatcagactcaattaaagaaccgcaacat 37466  T
Q  210 caatttaaattttttaataagtatgtttttgtcaactcagta 251  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  37465 caatttaaattttctaataagtatgtttttgtcaactcagta 37424  T

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Target: scaffold0284 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 447 - 530
Alignment:
Q  168 ttattttacgacaaattagactcaattaaagaatcgcaacatcaatttaaattttttaataagtatgtttttgtcaactcagta 251  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  447 ttattttacgacaaattagactcaattaaagaatcacaacatcaatttaaattttttaataagtatgtttttgtcaactcagta 530  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 23408840 - 23408938
Alignment:
Q  97 agagtatatggaataatatgagttgctggtaattttgtgggattgttgaagaattaggag-ttttggggtaattattttacgacaaattagactcaatta 195  Q
    |||||||| | ||||| ||||||| |||||||||| || || ||||||||||||| |||| |||||||||  ||||||  | | ||||||||||||||||    
T  23408840 agagtataggaaataaaatgagttactggtaattt-gtaggtttgttgaagaatttggagattttggggt--ttatttaccaaaaaattagactcaatta 23408936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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