View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0945_low_7 (Length: 553)

Name: NF0945_low_7
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0945_low_7
NF0945_low_7
[»] chr3 (5 HSPs)
chr3 (30-508)||(32950131-32950608)
chr3 (411-480)||(10069810-10069879)
chr3 (439-488)||(30432669-30432718)
chr3 (428-472)||(10069667-10069711)
chr3 (435-467)||(34298996-34299028)
[»] chr2 (2 HSPs)
chr2 (427-485)||(12120040-12120098)
chr2 (409-480)||(14780092-14780163)
[»] chr7 (4 HSPs)
chr7 (415-472)||(36443389-36443446)
chr7 (424-484)||(33529598-33529658)
chr7 (438-484)||(26728970-26729016)
chr7 (413-454)||(33952346-33952387)
[»] chr1 (2 HSPs)
chr1 (207-254)||(1470022-1470070)
chr1 (207-254)||(1476679-1476727)


Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 30 - 508
Target Start/End: Original strand, 32950131 - 32950608
Alignment:
Q  30 agaaagtgatttgtgaccccttgaggcttgaaagtttgtattaacaatcgacatattgtttttggattaaatatctcttttggtgtcctaatttatttta 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  32950131 agaaagtgatttgtgaccccttgaggcttgaaagtttgtattaacaatcgacatatcgtttttggattaaatatctcttttg-tgtcctaatttatttta 32950229  T
Q  130 aaagttcaatttgatcctcttaacttcaaaacaatcaaatcgatcccttaactttcaaacatgtcaatttgatttcttaacttaggtaagttaacacaat 229  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32950230 aaagttcaatttgatcctcttaacttcaaaacaatcaaatcggtcccttaactttcaaacatgtcaatttggtttcttaacttaggtaagttaacacaat 32950329  T
Q  230 ttgatccctaatttatgaaaatataatgtcatattcatatgttaaggtatcaaattgcactaacttacataagtgttagattagtatttagttgtaacat 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||    
T  32950330 ttgatccctaatttatgaaaatataatgtcatattcatatgttaaggtatcaagttgcactaacttacataagtgtcagattagtatttagttgtgacat 32950429  T
Q  330 tagtatttttcttattcatccaaatttgaatccgtgagtttcaactcttttaatctgtaactcaaaccagctgagctactacataagttaagaaaccaaa 429  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32950430 tagtatttttctgattcatccaaatttgaatccgtgagttccaactcttttaatctgtaactcaaaccagctgagctactacataagttaagaaaccaaa 32950529  T
Q  430 ttaatcaattttaaagttaagggatcaaacttaacttttaaaacaagttaaaggaccaactaagtattattgagacaac 508  Q
    ||||||||||||||||||||||||||||||| | |||||| |||||||||| |||||||||||||||||||||||||||    
T  32950530 ttaatcaattttaaagttaagggatcaaactgaccttttagaacaagttaagggaccaactaagtattattgagacaac 32950608  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 480
Target Start/End: Original strand, 10069810 - 10069879
Alignment:
Q  411 cataagttaagaaaccaaattaatcaattttaaagttaagggatcaaacttaacttttaaaacaagttaa 480  Q
    |||||||||||| |||||||| | ||||||| ||||  || || |||||| ||||||||||| |||||||    
T  10069810 cataagttaagagaccaaattgagcaatttttaagtgtagtgaccaaactaaacttttaaaataagttaa 10069879  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 488
Target Start/End: Original strand, 30432669 - 30432718
Alignment:
Q  439 tttaaagttaagggatcaaacttaacttttaaaacaagttaaaggaccaa 488  Q
    |||||||||||||||||||| | || ||| |||| |||||||||||||||    
T  30432669 tttaaagttaagggatcaaaatgaaatttaaaaataagttaaaggaccaa 30432718  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 472
Target Start/End: Complemental strand, 10069711 - 10069667
Alignment:
Q  428 aattaatcaattttaaagttaagggatcaaacttaacttttaaaa 472  Q
    ||||||||  ||||||||||||||||||||||| || ||||||||    
T  10069711 aattaatcggttttaaagttaagggatcaaactgaatttttaaaa 10069667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 435 - 467
Target Start/End: Original strand, 34298996 - 34299028
Alignment:
Q  435 caattttaaagttaagggatcaaacttaacttt 467  Q
    |||||||||||||||||||||||||| ||||||    
T  34298996 caattttaaagttaagggatcaaactgaacttt 34299028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 427 - 485
Target Start/End: Original strand, 12120040 - 12120098
Alignment:
Q  427 aaattaatcaattttaaagttaagggatcaaacttaacttttaaaacaagttaaaggac 485  Q
    ||||||||||||||||||||||| |||||||| | ||||||||||| || |||||||||    
T  12120040 aaattaatcaattttaaagttaaaggatcaaagtaaacttttaaaataaattaaaggac 12120098  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 480
Target Start/End: Original strand, 14780092 - 14780163
Alignment:
Q  409 tacataagttaagaaaccaaattaatcaattttaaagttaagggatcaaacttaacttttaaaacaagttaa 480  Q
    |||||||||||||| ||||||||||   ||||| |||||||||| | ||||| |||||||| || |||||||    
T  14780092 tacataagttaagagaccaaattaactgattttgaagttaaggggttaaactgaacttttacaataagttaa 14780163  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 415 - 472
Target Start/End: Original strand, 36443389 - 36443446
Alignment:
Q  415 agttaagaaaccaaattaatcaattttaaagttaagggatcaaacttaacttttaaaa 472  Q
    |||||||| || |||||||| ||||||||||||||| ||||||||| ||| |||||||    
T  36443389 agttaagagactaaattaataaattttaaagttaagtgatcaaactaaacatttaaaa 36443446  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 484
Target Start/End: Complemental strand, 33529658 - 33529598
Alignment:
Q  424 accaaattaatcaattttaaagttaagggatcaaacttaacttttaaaacaagttaaagga 484  Q
    |||||||||| | ||||||||||||||||| | ||| ||| |||||||| |||||||||||    
T  33529658 accaaattaaactattttaaagttaagggaccgaacataatttttaaaataagttaaagga 33529598  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 438 - 484
Target Start/End: Original strand, 26728970 - 26729016
Alignment:
Q  438 ttttaaagttaagggatcaaacttaacttttaaaacaagttaaagga 484  Q
    ||||||||||||||||  ||||| ||||||||||| |||||||||||    
T  26728970 ttttaaagttaagggactaaactaaacttttaaaataagttaaagga 26729016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 454
Target Start/End: Original strand, 33952346 - 33952387
Alignment:
Q  413 taagttaagaaaccaaattaatcaattttaaagttaagggat 454  Q
    |||||||||| |||||||||||  ||||||||||||||||||    
T  33952346 taagttaagagaccaaattaattgattttaaagttaagggat 33952387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 254
Target Start/End: Complemental strand, 1470070 - 1470022
Alignment:
Q  207 taacttaggtaagttaacacaatttgatccc-taatttatgaaaatata 254  Q
    ||||||| |||||||||||||| ||| |||| |||||||||||||||||    
T  1470070 taacttatgtaagttaacacaacttggtcccttaatttatgaaaatata 1470022  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 254
Target Start/End: Complemental strand, 1476727 - 1476679
Alignment:
Q  207 taacttaggtaagttaacacaatttgatccc-taatttatgaaaatata 254  Q
    ||||||| |||||||||||||| ||| |||| |||||||||||||||||    
T  1476727 taacttatgtaagttaacacaacttggtcccttaatttatgaaaatata 1476679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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