View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0945_low_70 (Length: 251)
Name: NF0945_low_70
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0945_low_70 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 24295873 - 24296095
Alignment:
| Q |
1 |
acaaaccggcagcaacatggtttgaaccgggtttaatgaaccgtgtacgtgagagtaattcaatgagtacggccatgacgaaaacaaggatcaacgctaa |
100 |
Q |
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| T |
24295873 |
acaaaccggcagcaacatggtttgaaccgggtttaatgaaccgtgtacgtgagagtaattcaatgagtacggccatgacgaaaacaaggatcaacgctaa |
24295972 |
T |
|
| Q |
101 |
tacatacataccggtatcaccattaggccaattgttgaagagaattaaagcatctttgccccagaagaatgtcatgtgcatcataccgtgcatcttatga |
200 |
Q |
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| T |
24295973 |
tacatacataccggtatcaccgttaggccaattgttgaagagaattaaagcgtctttgccccagaagaatgtcatgtgcatcataccgtgcatcttatga |
24296072 |
T |
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| Q |
201 |
cccatcatcatggtgttattggt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
24296073 |
cccatcatcatggtgttattggt |
24296095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 24511164 - 24511365
Alignment:
| Q |
19 |
ggtttgaaccgggtttaatgaaccgtgtacgtgagagtaattcaatgagtacggccatgacgaaaacaaggatcaacgctaatacatacataccggtatc |
118 |
Q |
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| T |
24511164 |
ggtttgaaccgggtttaatgaaccgggtgcttgagagaaactcgatgagtatggacatggcgaaaacaaggatcaaggccaatacatacttaccagaatt |
24511263 |
T |
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| Q |
119 |
accattaggccaattgttgaagagaattaaagcatctttgccccagaagaatgtcatgtgcatcataccgtgcatcttatgacccatcatcatggtgtta |
218 |
Q |
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| T |
24511264 |
accagcaggccagttatcaaagagaatcaatgcatctttaccccagaaaaatgtcatgtgcatcatgtcatgcatc---tgacccatcatcatagtgtca |
24511360 |
T |
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| Q |
219 |
ttggt |
223 |
Q |
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||||| |
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| T |
24511361 |
ttggt |
24511365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 214
Target Start/End: Original strand, 24508867 - 24508956
Alignment:
| Q |
125 |
aggccaattgttgaagagaattaaagcatctttgccccagaagaatgtcatgtgcatcataccgtgcatcttatgacccatcatcatggt |
214 |
Q |
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|||||||||||| |||||||| || | ||| || |||||||||||||||||||| ||||| || ||||||||| | | |||||||||||| |
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| T |
24508867 |
aggccaattgttaaagagaatcaacgaatccttaccccagaagaatgtcatgtgtatcatgccctgcatcttaaggctcatcatcatggt |
24508956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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