View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0945_low_71 (Length: 251)
Name: NF0945_low_71
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0945_low_71 |
 | |
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| [»] scaffold0019 (1 HSPs) |
| | |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 11739971 - 11739727
Alignment:
| Q |
1 |
ccactagcaaagttacaacataagtatctaagcaaacttctcgtggcacaagatgaaaggttaaaggctagttccgaggctctagtgaatgtgaaagtgt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11739971 |
ccactagcaaagttacaacataagtatctaagcaaacttctcgtggcacaagatgaaaggttaaaggctagttccgaggctctagtgaatgtgaaagtgt |
11739872 |
T |
|
| Q |
101 |
tgaagttatatgcatgggaaacccattttaaaaatgctatagaaagcctaagattttccgaactcaaattcttatcttcagtgctactgcaaaaagcata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11739871 |
tgaagttatatgcatgggaaacccattttaaaaatgctatagaaagcctcagattttccgaactcaaattcttatcttcagtgctactgcaaaaagcata |
11739772 |
T |
|
| Q |
201 |
caatgtcattctcttctggttttcaccgttttttatctctgctgc |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
11739771 |
caatgtcattctcttctggttttcaccgtttttgatctctgctgc |
11739727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 12094199 - 12093973
Alignment:
| Q |
1 |
ccactagcaaagttacaacataagtatctaagcaaacttctcgtggcacaagatgaaaggttaaaggctagttccgaggctctagtgaatgtgaaagtgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||| ||||| |||||||||||||| ||||||||||| |||||||| |||||| |||||||| |
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| T |
12094199 |
ccactagcaaagttacaacataagtatcttagtaaacttctggtggcccaagatgaaaggttgaaggctagttctgaggctctggtgaatatgaaagtgc |
12094100 |
T |
|
| Q |
101 |
tgaagttatatgcatgggaaacccattttaaaaatgctatagaaagcctaagattttccgaactcaaattcttatcttcagtgctactgcaaaaagcata |
200 |
Q |
| |
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| ||||||||||||||||||| |||||||||||| | || |||| ||||||| || |||| ||||| |||||||||||| || | ||||| ||||| |
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| T |
12094099 |
taaagttatatgcatgggaaatgcattttaaaaattccattgaaatcctaagaattgttgaacaaaaattgttatcttcagtgttattacaaaaggcata |
12094000 |
T |
|
| Q |
201 |
caatgtcattctcttctggttttcacc |
227 |
Q |
| |
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|| | |||||||| ||||||||||| |
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|
| T |
12093999 |
cagccttattctcttttggttttcacc |
12093973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 11755736 - 11755962
Alignment:
| Q |
1 |
ccactagcaaagttacaacataagtatctaagcaaacttctcgtggcacaagatgaaaggttaaaggctagttccgaggctctagtgaatgtgaaagtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| || |||||||| |||||||| ||||| |||||||| |
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|
| T |
11755736 |
ccactagcaaagttacaacataagtatctaagtaaacttctggtggcccaagatgaaaggttgaaagctagttctgaggctctggtgaacatgaaagtgc |
11755835 |
T |
|
| Q |
101 |
tgaagttatatgcatgggaaacccattttaaaaatgctatagaaagcctaagattttccgaactcaaattcttatcttcagtgctactgcaaaaagcata |
200 |
Q |
| |
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| ||||||||||||||||||| |||||||||||| | || |||| ||||||| || ||| ||||| ||||||||||||||| | ||||| ||||| |
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| T |
11755836 |
taaagttatatgcatgggaaatgcattttaaaaattccattgaaatcctaagaattgttgaagaaaaattgttatcttcagtgctattacaaaaggcata |
11755935 |
T |
|
| Q |
201 |
caatgtcattctcttctggttttcacc |
227 |
Q |
| |
|
|| | || ||||| ||||||||||| |
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|
| T |
11755936 |
cagccttatgctcttttggttttcacc |
11755962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 11632136 - 11632001
Alignment:
| Q |
1 |
ccactagcaaagttacaacataagtatctaagcaaacttctcgtggcacaagatgaaaggttaaaggctagttccgaggctctagtgaatgtgaaagtgt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||| | |||||||||||||| || |||||||||||||| |||||||| |||||| ||||||||| |
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|
| T |
11632136 |
ccactagcaaagttacaacacaagtatcagagcaaacttatggtggcacaagatgagagattaaaggctagttcggaggctcttgtgaatatgaaagtgt |
11632037 |
T |
|
| Q |
101 |
tgaagttatatgcatgggaaacccattttaaaaatg |
136 |
Q |
| |
|
||||||| ||||| ||||||| ||||||||||||| |
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|
| T |
11632036 |
tgaagttgtatgcgtgggaaaatcattttaaaaatg |
11632001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 145
Target Start/End: Complemental strand, 11710677 - 11710537
Alignment:
| Q |
5 |
tagcaaagttacaacataagtatctaagcaaacttctcgtggcacaagatgaaaggttaaaggctagttccgaggctctagtgaatgtgaaagtgttgaa |
104 |
Q |
| |
|
|||||||||||||| | |||| || ||| ||||| | ||||||||||| || || || |||||||||||||||||||| |||||| |||||||| | || |
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| T |
11710677 |
tagcaaagttacaaaacaagtttcagagcgaacttatggtggcacaagacgagagattgaaggctagttccgaggctcttgtgaatatgaaagtgctcaa |
11710578 |
T |
|
| Q |
105 |
gttatatgcatgggaaacccattttaaaaatgctatagaaa |
145 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
11710577 |
gttatatgcatgggaaaaccattttaaaaatgctatagaaa |
11710537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 11618096 - 11618231
Alignment:
| Q |
1 |
ccactagcaaagttacaacataagtatctaagcaaacttctcgtggcacaagatgaaaggttaaaggctagttccgaggctctagtgaatgtgaaagtgt |
100 |
Q |
| |
|
||||||||||| |||||||| |||| || || | ||||| | ||||| |||||||| || |||||||| ||||| |||||||| |||||| ||||||||| |
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| T |
11618096 |
ccactagcaaacttacaacacaagtttcaaacccaacttatggtggcgcaagatgagagattaaaggcgagttcggaggctcttgtgaatatgaaagtgt |
11618195 |
T |
|
| Q |
101 |
tgaagttatatgcatgggaaacccattttaaaaatg |
136 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||| |
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|
| T |
11618196 |
tgaagctatatgcatgggaaacacattttaaaaatg |
11618231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 11674154 - 11674023
Alignment:
| Q |
4 |
ctagcaaagttacaacataagtatctaagcaaacttctcgtggcacaagatgaaaggttaaaggctagttccgaggctctagtgaatgtgaaagtgttga |
103 |
Q |
| |
|
||||||||| ||||||| |||| || |||||||| | ||||| |||||||| || ||||| || ||||| |||||||| |||||| |||||||||||| |
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|
| T |
11674154 |
ctagcaaagctacaacacaagtttcagagcaaactaatggtggcgcaagatgagagattaaaagcgagttctgaggctcttgtgaatatgaaagtgttga |
11674055 |
T |
|
| Q |
104 |
agttatatgcatgggaaacccattttaaaaat |
135 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |
|
|
| T |
11674054 |
agctatatgcatgggaaacccattttaaaaat |
11674023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 11662912 - 11663056
Alignment:
| Q |
1 |
ccactagcaaagttacaacataagtatctaagcaaacttctcgtggcacaagatgaaaggttaaaggctagttccgaggctctagtgaatgtgaaagtgt |
100 |
Q |
| |
|
|||||||||||||| ||||| |||| || || ||||| | ||||||||||| || || || ||||||||||| |||||||| |||| | |||||||| |
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|
| T |
11662912 |
ccactagcaaagttgcaacacaagtttcagagtgaacttatggtggcacaagacgagagattgaaggctagttctgaggctcttgtgagtatgaaagtgc |
11663011 |
T |
|
| Q |
101 |
tgaagttatatgcatgggaaacccattttaaaaatgctatagaaa |
145 |
Q |
| |
|
| ||| |||||||||||||||| |||||||||| | ||||||||| |
|
|
| T |
11663012 |
taaagctatatgcatgggaaacacattttaaaagttctatagaaa |
11663056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 7 - 144
Target Start/End: Original strand, 44811503 - 44811640
Alignment:
| Q |
7 |
gcaaagttacaacataagtatctaagcaaacttctcgtggcacaagatgaaaggttaaaggctagttccgaggctctagtgaatgtgaaagtgttgaagt |
106 |
Q |
| |
|
|||||||||||||| |||| || |||||||||| | || ||||||||||| || || ||||||| ||| |||||||| |||||| |||| ||| |||||| |
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|
| T |
44811503 |
gcaaagttacaacacaagtttcaaagcaaacttatggtagcacaagatgagagattgaaggctacttctgaggctcttgtgaatatgaaggtgctgaagt |
44811602 |
T |
|
| Q |
107 |
tatatgcatgggaaacccattttaaaaatgctatagaa |
144 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
44811603 |
tatatgcatgggaaaccagctttaaaaattctatagaa |
44811640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 9043 - 8950
Alignment:
| Q |
43 |
gtggcacaagatgaaaggttaaaggctagttccgaggctctagtgaatgtgaaagtgttgaagttatatgcatgggaaacccattttaaaaatg |
136 |
Q |
| |
|
|||||||||||||| || ||||||||||||| ||| || | || | | ||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
9043 |
gtggcacaagatgagagattaaaggctagttttgagtcttttgttactatgaaagtgttgaagttatatgcatgggaaacacattttaaaaatg |
8950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 134
Target Start/End: Original strand, 12491 - 12581
Alignment:
| Q |
44 |
tggcacaagatgaaaggttaaaggctagttccgaggctctagtgaatgtgaaagtgttgaagttatatgcatgggaaacccattttaaaaa |
134 |
Q |
| |
|
|||||||||| || || ||||||| |||||| || ||||| |||| ||||||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
12491 |
tggcacaagacgagagattaaaggttagttctgaagctctcacgaatatgaaagtgttgaaactatatgcatgggaaaaccattttaaaaa |
12581 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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