View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0945_low_79 (Length: 237)

Name: NF0945_low_79
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0945_low_79
NF0945_low_79
[»] chr5 (1 HSPs)
chr5 (17-174)||(6729372-6729529)


Alignment Details
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 6729372 - 6729529
Alignment:
Q  17 agtgagatgaagtgataacagtgtagagaaaggaataaaatttgttgaggtagagaatggggttgttgcagatccagtgaaaggtgatgagtttgtgtgg 116  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  6729372 agtgtgatgaagtgataacggtgtagagaaaagaataaaatttgttgaggtagagaatggggttgttgcagatctagtgaagggtgatgagtttgtgtgg 6729471  T
Q  117 gttagaggtagtgtggtgttggatataggagtaaggactggttcaagcacaggttctg 174  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6729472 gttagaggtagtgtggtgttggatataggagtaaggattggttcaagcacaggttctg 6729529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University