View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0945_low_82 (Length: 213)
Name: NF0945_low_82
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0945_low_82 |
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Alignment Details
Target: chr3 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 8522810 - 8522687
Alignment:
| Q |
1 |
ataggaaacttgacatacttggaatctttggatctttcctcaaatatgttaaccggtgcaattcctttggaattaaccaatcttaacagtcttgaagtct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
8522810 |
ataggaaacttgacatacttggaatctttggatctttcctcaaatatgttaaccgatgtgattcctttggaattaaccaatcttaacagtcttgaagtct |
8522711 |
T |
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| Q |
101 |
tggatctttccaataatcgtcttg |
124 |
Q |
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|||||||||||||||||||||||| |
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| T |
8522710 |
tggatctttccaataatcgtcttg |
8522687 |
T |
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Target: chr6 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 24140534 - 24140436
Alignment:
| Q |
4 |
ggaaacttgacatacttggaatctttggatctttcctcaaatatgttaaccggtgcaattcctttggaattaaccaatcttaacagtcttgaagtcttg |
102 |
Q |
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||||| ||||||||||||||||||||| ||||||| ||||||||||||||||| | ||||||| ||||||||||||| | |||||||||||||||||| |
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| T |
24140534 |
ggaaagttgacatacttggaatctttgaatctttcatcaaatatgttaaccggcgtgattccttcggaattaaccaatatgaacagtcttgaagtcttg |
24140436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 25523417 - 25523532
Alignment:
| Q |
1 |
ataggaaacttgacatacttggaatctttggatctttcctcaaatatgttaaccggtgcaattcctttggaattaaccaatcttaacagtcttgaagtct |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||| ||||||||||||| | ||| |||||||||| |
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| T |
25523417 |
ataggaaacttgacatacttggaatctctggatctttccctgaatatgttaaccggtgtgattcctgcggaattaaccaatttaaactttcttgaagtca |
25523516 |
T |
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| Q |
101 |
tggatctttccaataa |
116 |
Q |
| |
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|| ||||||||||||| |
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| T |
25523517 |
tgaatctttccaataa |
25523532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 34233181 - 34233291
Alignment:
| Q |
6 |
aaacttgacatacttggaatctttggatctttcctcaaatatgttaaccggtgcaattcctttggaattaaccaatcttaacagtcttgaagtcttggat |
105 |
Q |
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|||||||||| |||||||||| |||||||| || ||||||||| | || ||| |||||| |||||||||||| | ||||||||||||||||||||| |
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| T |
34233181 |
aaacttgacaaacttggaatcgttggatctctcgtcaaatatgctcactggtatgattcctgcagaattaaccaatttgaacagtcttgaagtcttggat |
34233280 |
T |
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| Q |
106 |
ctttccaataa |
116 |
Q |
| |
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||||||||||| |
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| T |
34233281 |
ctttccaataa |
34233291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 34240954 - 34241064
Alignment:
| Q |
6 |
aaacttgacatacttggaatctttggatctttcctcaaatatgttaaccggtgcaattcctttggaattaaccaatcttaacagtcttgaagtcttggat |
105 |
Q |
| |
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|||||||||| |||||||||| |||||||| || ||||||||| | || ||| |||||| |||||||||||| | ||||||||||||||||||||| |
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| T |
34240954 |
aaacttgacaaacttggaatcgttggatctctcgtcaaatatgctcactggtatgattcctgcagaattaaccaatttgaacagtcttgaagtcttggat |
34241053 |
T |
|
| Q |
106 |
ctttccaataa |
116 |
Q |
| |
|
||||||||||| |
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|
| T |
34241054 |
ctttccaataa |
34241064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 110
Target Start/End: Original strand, 41572403 - 41572511
Alignment:
| Q |
2 |
taggaaacttgacatacttggaatctttggatctttcctcaaatatgttaaccggtgcaattcctttggaattaaccaatcttaacagtcttgaagtctt |
101 |
Q |
| |
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||||||||||| || || ||||||| ||||||||||| |||||||| | || |||| |||||||| ||||||| |||||| ||| || ||| ||| || |
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| T |
41572403 |
taggaaacttgtcaaacatggaatcattggatctttcgtcaaatatactcactggtgtaattccttcagaattaatcaatctgaacggtattggagtatt |
41572502 |
T |
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| Q |
102 |
ggatctttc |
110 |
Q |
| |
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| ||||||| |
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| T |
41572503 |
gaatctttc |
41572511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 110
Target Start/End: Original strand, 41618042 - 41618150
Alignment:
| Q |
2 |
taggaaacttgacatacttggaatctttggatctttcctcaaatatgttaaccggtgcaattcctttggaattaaccaatcttaacagtcttgaagtctt |
101 |
Q |
| |
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||||||||||| || || ||||||| ||||||||||| |||||||| | || |||| |||||||| ||||||| |||||| ||| || ||| ||| || |
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| T |
41618042 |
taggaaacttgtcaaacatggaatcattggatctttcgtcaaatatactcactggtgtaattccttcagaattaatcaatctgaacggtattggagtatt |
41618141 |
T |
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| Q |
102 |
ggatctttc |
110 |
Q |
| |
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| ||||||| |
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| T |
41618142 |
gaatctttc |
41618150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 11117850 - 11117770
Alignment:
| Q |
1 |
ataggaaacttgacatacttggaatctttggatctttcctcaaatatgttaaccggtgcaattcctttggaattaaccaat |
81 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||| |||||| |||||||||||| |
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| T |
11117850 |
ataggaaacttggcatacttggaatctttggatctttcatcaaatatgttaaccagtgtgattcctgcagaattaaccaat |
11117770 |
T |
|
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