View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0946_high_12 (Length: 251)
Name: NF0946_high_12
Description: NF0946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0946_high_12 |
 | |
|
| [»] chr8 (5 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 23 - 251
Target Start/End: Complemental strand, 31652445 - 31652217
Alignment:
| Q |
23 |
atcatcacagacagataggtttgtaaattcatcttattttaaagggaatgctcattaacacaagcacactttaatgcttttaagattgatagtaataaaa |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31652445 |
atcatcacagacagataggtttgtaaattcatcttattttaaagggaatgctcattaacacaagcacactttaatgtttttaagattgatagtaataaaa |
31652346 |
T |
|
| Q |
123 |
gaagactttaccgtgcaaactcgatggatctaaagttgcatcaggcttcatgctccagaaaagtatagcattacccatctttggcttaattgatagtcct |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31652345 |
gaagactttaccgtgcaaactcgatggatctaaagttgcatcaggcttcatgctccagaaaagtatagcattacccatctttggcttaattgatagtcct |
31652246 |
T |
|
| Q |
223 |
ccttttccacaatcggaaagctcattcca |
251 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
31652245 |
ccttttccacaatcggaaagctcattcca |
31652217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 26 - 251
Target Start/End: Complemental strand, 31657246 - 31657021
Alignment:
| Q |
26 |
atcacagacagataggtttgtaaattcatcttattttaaagggaatgctcattaacacaagcacactttaatgcttttaagattgatagtaataaaagaa |
125 |
Q |
| |
|
|||||| |||||||||||| |||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31657246 |
atcacatacagataggtttttaaattcatcttgttttaaagggaatgctcgttaacacaaacacactttaatgcttttaagtttgatagtaataaaagaa |
31657147 |
T |
|
| Q |
126 |
gactttaccgtgcaaactcgatggatctaaagttgcatcaggcttcatgctccagaaaagtatagcattacccatctttggcttaattgatagtcctcct |
225 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31657146 |
gaatttaccgtgcaaactcgatggatctaaagttgcatcaggcttcatgctccagaaaagtatagcattacccatctttggcttaattgacagtcctcct |
31657047 |
T |
|
| Q |
226 |
tttccacaatcggaaagctcattcca |
251 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
31657046 |
tttccacaatcggaaagctcattcca |
31657021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 136 - 251
Target Start/End: Complemental strand, 31630795 - 31630680
Alignment:
| Q |
136 |
tgcaaactcgatggatctaaagttgcatcaggcttcatgctccagaaaagtatagcattacccatctttggcttaattgatagtcctccttttccacaat |
235 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||| ||||||| |||| ||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
31630795 |
tgcaaactcgatggatctaaagttccatctggcttcatgctccaaaaaagtaatgcatcacccatctttggcttaattgaaagtcctttttttccacaat |
31630696 |
T |
|
| Q |
236 |
cggaaagctcattcca |
251 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
31630695 |
ccgaaagctcattcca |
31630680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 141 - 251
Target Start/End: Complemental strand, 31638112 - 31638002
Alignment:
| Q |
141 |
actcgatggatctaaagttgcatcaggcttcatgctccagaaaagtatagcattacccatctttggcttaattgatagtcctccttttccacaatcggaa |
240 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||| |
|
|
| T |
31638112 |
actcaatggatctacggttgcatcaggcttcatgccccagaaaagtatagcattacccatctttggcttaattgaaagtcccttttttccacaatcagaa |
31638013 |
T |
|
| Q |
241 |
agctcattcca |
251 |
Q |
| |
|
||||||||||| |
|
|
| T |
31638012 |
agctcattcca |
31638002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 147 - 251
Target Start/End: Complemental strand, 31646810 - 31646706
Alignment:
| Q |
147 |
tggatctaaagttgcatcaggcttcatgctccagaaaagtatagcattacccatctttggcttaattgatagtcctccttttccacaatcggaaagctca |
246 |
Q |
| |
|
||||||||||||| |||| |||||||| ||||||||||||| |||| ||||||||||||||||||||| |||||| |||||||||||| ||||||||| |
|
|
| T |
31646810 |
tggatctaaagttccatctggcttcatactccagaaaagtaatgcatcacccatctttggcttaattgaaagtcctttttttccacaatccgaaagctca |
31646711 |
T |
|
| Q |
247 |
ttcca |
251 |
Q |
| |
|
||||| |
|
|
| T |
31646710 |
ttcca |
31646706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 136 - 248
Target Start/End: Original strand, 9104735 - 9104847
Alignment:
| Q |
136 |
tgcaaactcgatggatctaaagttgcatcaggcttcatgctccagaaaagtatagcattacccatctttggcttaattgatagtcctccttttccacaat |
235 |
Q |
| |
|
||||| || |||| ||||||||||||||| |||||||||||||||||||||| ||||| ||| |||||||||||||||| |||||| ||| ||||||| |
|
|
| T |
9104735 |
tgcaagcttgatgcatctaaagttgcatccggcttcatgctccagaaaagtaaagcatcacctctctttggcttaattgaaagtccttttttcccacaat |
9104834 |
T |
|
| Q |
236 |
cggaaagctcatt |
248 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
9104835 |
cagaaagctcatt |
9104847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University