View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0946_high_9 (Length: 261)
Name: NF0946_high_9
Description: NF0946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0946_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 52145410 - 52145614
Alignment:
| Q |
18 |
ccaacaatatgagaatggtcattggcagacagggcagtacaacgagttgtgttatcatttgttacctcaaatttacacttatttggacacatgtataact |
117 |
Q |
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| T |
52145410 |
ccaaaaatatgagaatggtcattggcagacagggcagtacaacgagttgtgttatcatttgttacctcaaatttacacttatttggacacatgtataact |
52145509 |
T |
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| Q |
118 |
tagttccttcatcttcgtcatcaacgtcttcattctgggtaaggaagcctgagatttcagttgaaaagctttgagctcttgggtttagcaagacatcctt |
217 |
Q |
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| T |
52145510 |
tagttccttcatcttcgtcatcaacgtcttcattctgggtaaggaagcctgagatttcagttgaaaagctttgagctcttgggtttagcaagacatcctt |
52145609 |
T |
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| Q |
218 |
cgttt |
222 |
Q |
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||||| |
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| T |
52145610 |
cgttt |
52145614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 52142021 - 52142078
Alignment:
| Q |
147 |
tcattctgggtaaggaagcctgagatttcagttgaaaagctttgagctcttgggttta |
204 |
Q |
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| T |
52142021 |
tcattctgggtaaggaatcctgaaatttcagttgacgagctttgagctcttgggttta |
52142078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 17522563 - 17522491
Alignment:
| Q |
150 |
ttctgggtaaggaagcctgagatttcagttgaaaagctttgagctcttgggtttagcaagacatccttcgttt |
222 |
Q |
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| T |
17522563 |
ttctgagtaaggaatcctgcgatttcagttgacgagctttgagctcttgggtttaagagaacatccttcgttt |
17522491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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