View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0946_low_10 (Length: 324)

Name: NF0946_low_10
Description: NF0946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0946_low_10
NF0946_low_10
[»] chr3 (9 HSPs)
chr3 (42-235)||(24263283-24263476)
chr3 (90-142)||(15806482-15806533)
chr3 (92-148)||(28135826-28135882)
chr3 (95-153)||(17796593-17796651)
chr3 (95-153)||(19105033-19105091)
chr3 (97-142)||(3041200-3041244)
chr3 (97-142)||(18013924-18013968)
chr3 (266-315)||(24263204-24263253)
chr3 (195-235)||(41671470-41671510)
[»] chr1 (2 HSPs)
chr1 (90-148)||(18337491-18337549)
chr1 (195-235)||(12513562-12513602)
[»] chr7 (3 HSPs)
chr7 (97-147)||(23618589-23618638)
chr7 (90-148)||(26565597-26565655)
chr7 (108-141)||(8254285-8254318)
[»] scaffold0534 (1 HSPs)
scaffold0534 (195-235)||(961-1001)
[»] chr8 (2 HSPs)
chr8 (195-235)||(17566389-17566429)
chr8 (92-147)||(1018233-1018287)
[»] chr4 (4 HSPs)
chr4 (195-235)||(6346753-6346793)
chr4 (90-142)||(24719619-24719670)
chr4 (94-157)||(6347026-6347087)
chr4 (202-235)||(24719866-24719899)
[»] chr5 (4 HSPs)
chr5 (90-157)||(43005904-43005970)
chr5 (201-235)||(26021608-26021642)
chr5 (195-235)||(19979859-19979899)
chr5 (109-157)||(26021395-26021442)
[»] chr2 (3 HSPs)
chr2 (96-142)||(31023331-31023376)
chr2 (202-235)||(16767084-16767117)
chr2 (202-235)||(16767221-16767254)


Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 42 - 235
Target Start/End: Complemental strand, 24263476 - 24263283
Alignment:
Q  42 aaagtaccagcattgatatcctcctaaaagttcttgtttgattgggtctcctagtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggattt 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24263476 aaagtaccagcattgatatcctcctaaaagttcttgtttgattgggtctcctagtaaaatcgcacaaaaatcgtgaaatccatacaaaattgtaggattt 24263377  T
Q  142 ttaagggattttgaagaatgaataaatacaatttaatatatcacagaggttcatttacaattttcgattttgctcttcccttttgacctgaagc 235  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24263376 ttaagggattttgaagaatgaataaatacaatttaatatgtcacagaggttcatttacaattttcgattttgctcttcccttttgacctgaagc 24263283  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 15806533 - 15806482
Alignment:
Q  90 tcctagtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttt 142  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  15806533 tcctagtaaaatcgcacaaaa-tcgtgaaatccatacaaaatcgcaggatttt 15806482  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 28135826 - 28135882
Alignment:
Q  92 ctagtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttttaaggg 148  Q
    ||||||||||| ||  |||||||| ||||||||||||||||| |||||||| |||||    
T  28135826 ctagtaaaatcacatcaaaatcgtaaaatccatacaaaatcgaaggattttaaaggg 28135882  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 17796593 - 17796651
Alignment:
Q  95 gtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttttaagggatttt 153  Q
    ||||||||| |  |||||||||||||||||||||||| | |||||||| ||||| ||||    
T  17796593 gtaaaatcgtatcaaaatcgtgaaatccatacaaaattgcaggattttaaagggttttt 17796651  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 19105033 - 19105091
Alignment:
Q  95 gtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttttaagggatttt 153  Q
    ||||||||| |  |||||||||||||||||||||||| | |||||||| ||||| ||||    
T  19105033 gtaaaatcgtatcaaaatcgtgaaatccatacaaaattgcaggattttaaagggttttt 19105091  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 3041200 - 3041244
Alignment:
Q  97 aaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttt 142  Q
    |||||||||||||| ||||||||||||| |||||||| ||||||||    
T  3041200 aaaatcgcacaaaa-tcgtgaaatccattcaaaatcgcaggatttt 3041244  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 18013924 - 18013968
Alignment:
Q  97 aaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttt 142  Q
    |||||||||||||| |||||||||||||  ||||||||||||||||    
T  18013924 aaaatcgcacaaaa-tcgtgaaatccatttaaaatcgtaggatttt 18013968  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 24263253 - 24263204
Alignment:
Q  266 agtattcctgtcacacnnnnnnncattatgcaacatttattaagaataat 315  Q
    ||||||||||||||||       |||||||||||||||||||||||||||    
T  24263253 agtattcctgtcacacaaaaaaacattatgcaacatttattaagaataat 24263204  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 41671470 - 41671510
Alignment:
Q  195 tttacaattttcgattttgctcttcccttttgacctgaagc 235  Q
    ||||||||| ||||||||||||||| |||| ||||||||||    
T  41671470 tttacaattatcgattttgctcttctctttcgacctgaagc 41671510  T

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Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 18337549 - 18337491
Alignment:
Q  90 tcctagtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttttaaggg 148  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||    
T  18337549 tcctagtaaaatcgcatcaaaatcgtgaaatccatacaaaatcgtaggattttaaaggg 18337491  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 12513562 - 12513602
Alignment:
Q  195 tttacaattttcgattttgctcttcccttttgacctgaagc 235  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  12513562 tttacaattgtcgattttgctcttctcttttgacctgaagc 12513602  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 23618638 - 23618589
Alignment:
Q  97 aaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttttaagg 147  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  23618638 aaaatcgcacaaaa-tcgtgaaatccattcaaaatcgtaggattttgaagg 23618589  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 26565655 - 26565597
Alignment:
Q  90 tcctagtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttttaaggg 148  Q
    ||||| ||||||||||  |||||| |||||| ||||||||||| ||||||||| |||||    
T  26565655 tcctactaaaatcgcatcaaaatcatgaaattcatacaaaatcctaggattttaaaggg 26565597  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 141
Target Start/End: Complemental strand, 8254318 - 8254285
Alignment:
Q  108 aaaatcgtgaaatccatacaaaatcgtaggattt 141  Q
    ||||||||||||||||| ||||||||||||||||    
T  8254318 aaaatcgtgaaatccattcaaaatcgtaggattt 8254285  T

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Target: scaffold0534 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 961 - 1001
Alignment:
Q  195 tttacaattttcgattttgctcttcccttttgacctgaagc 235  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  961 tttacgattttcaattttgctcttcccttttgacctgaagc 1001  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 17566389 - 17566429
Alignment:
Q  195 tttacaattttcgattttgctcttcccttttgacctgaagc 235  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  17566389 tttacgattttcaattttgctcttcccttttgacctgaagc 17566429  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 1018287 - 1018233
Alignment:
Q  92 ctagtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttttaagg 147  Q
    |||||||| |||||||| | |||| |||||||||||||||||||||||||| ||||    
T  1018287 ctagtaaagtcgcacaata-tcgtaaaatccatacaaaatcgtaggattttaaagg 1018233  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 6346793 - 6346753
Alignment:
Q  195 tttacaattttcgattttgctcttcccttttgacctgaagc 235  Q
    ||||| |||||||||||||||||||||||| ||||||||||    
T  6346793 tttacgattttcgattttgctcttccctttcgacctgaagc 6346753  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 24719619 - 24719670
Alignment:
Q  90 tcctagtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttt 142  Q
    ||||||||||||||||| |||| |||||||| |||||||||||| ||||||||    
T  24719619 tcctagtaaaatcgcacgaaaa-cgtgaaatacatacaaaatcgcaggatttt 24719670  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 6347087 - 6347026
Alignment:
Q  94 agtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttttaagggattttgaag 157  Q
    ||||||||||||||||| ||||||||| || ||||||||| |||||||| ||||| ||||||||    
T  6347087 agtaaaatcgcacaaaa-tcgtgaaattcacacaaaatcgcaggattttaaaggg-ttttgaag 6347026  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 24719866 - 24719899
Alignment:
Q  202 ttttcgattttgctcttcccttttgacctgaagc 235  Q
    ||||||||||||||||||||||| ||||||||||    
T  24719866 ttttcgattttgctcttccctttcgacctgaagc 24719899  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 157
Target Start/End: Complemental strand, 43005970 - 43005904
Alignment:
Q  90 tcctagtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttttaagggattttgaag 157  Q
    ||||| |||||||||   |||||| |||||| |||||||||||| |||||||||||||| ||||||||    
T  43005970 tcctaataaaatcgcgtcaaaatcatgaaattcatacaaaatcgcaggatttttaaggg-ttttgaag 43005904  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 235
Target Start/End: Original strand, 26021608 - 26021642
Alignment:
Q  201 attttcgattttgctcttcccttttgacctgaagc 235  Q
    |||||||||||||||||||||||||| ||||||||    
T  26021608 attttcgattttgctcttcccttttggcctgaagc 26021642  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 19979859 - 19979899
Alignment:
Q  195 tttacaattttcgattttgctcttcccttttgacctgaagc 235  Q
    ||||| ||| ||||||||||||||| |||||||||||||||    
T  19979859 tttacgattgtcgattttgctcttctcttttgacctgaagc 19979899  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 26021395 - 26021442
Alignment:
Q  109 aaatcgtgaaatccatacaaaatcgtaggatttttaagggattttgaag 157  Q
    ||||||||| ||||||||||||||| |||||||| ||||| ||||||||    
T  26021395 aaatcgtgacatccatacaaaatcgcaggattttaaaggg-ttttgaag 26021442  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 31023331 - 31023376
Alignment:
Q  96 taaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttt 142  Q
    ||||||||||||||| || ||||||| ||||||||||||||||||||    
T  31023331 taaaatcgcacaaaa-tcttgaaatctatacaaaatcgtaggatttt 31023376  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 16767084 - 16767117
Alignment:
Q  202 ttttcgattttgctcttcccttttgacctgaagc 235  Q
    ||||||||||||||||||| ||||||||||||||    
T  16767084 ttttcgattttgctcttcctttttgacctgaagc 16767117  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 16767221 - 16767254
Alignment:
Q  202 ttttcgattttgctcttcccttttgacctgaagc 235  Q
    ||||||||||||||||||| ||||||||||||||    
T  16767221 ttttcgattttgctcttcctttttgacctgaagc 16767254  T

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