View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0946_low_11 (Length: 320)
Name: NF0946_low_11
Description: NF0946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0946_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 2410842 - 2411072
Alignment:
| Q |
1 |
tcgtagaaatcgtcgtcaatttctatttcctcttcttcaattataggcaagaatcgattttctgacattattttgttaacaaaagaaaagtgttacagta |
100 |
Q |
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| T |
2410842 |
tcgtagaaatcgtcgtcaatttctatttcctcttcttcaattataggcaagaatcgattttctgacattattttgttaaga--------gcgttacagta |
2410933 |
T |
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| Q |
101 |
acacagtgttgtttttgttttggtgtttgtaacaacaagtttagattgttcgaagaattttaaagtcccgtgtaactagccgttacgattcagacaggct |
200 |
Q |
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| T |
2410934 |
acacagtgttgtttttgttttggtgtt-gtaacaacaagtttagattgttcgaagaattttaaagtcccgtgtaactagccgttacgattcagacaggct |
2411032 |
T |
|
| Q |
201 |
ggtagtaagagaataaaagaaacggtattcaagggttcttttc |
243 |
Q |
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| T |
2411033 |
g---gtaagagaataaaagaaacggtattcaagggttcttttc |
2411072 |
T |
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