View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0946_low_14 (Length: 317)

Name: NF0946_low_14
Description: NF0946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0946_low_14
NF0946_low_14
[»] chr6 (26 HSPs)
chr6 (40-239)||(33330316-33330516)
chr6 (40-239)||(33335813-33336013)
chr6 (40-239)||(16838758-16838958)
chr6 (40-239)||(6005431-6005631)
chr6 (40-239)||(28155444-28155640)
chr6 (40-239)||(6438515-6438711)
chr6 (40-237)||(14737452-14737647)
chr6 (40-235)||(28184519-28184714)
chr6 (40-237)||(22010572-22010768)
chr6 (40-237)||(14742312-14742507)
chr6 (40-237)||(11856988-11857184)
chr6 (40-122)||(5674770-5674853)
chr6 (176-239)||(5343628-5343691)
chr6 (48-122)||(5757478-5757553)
chr6 (48-122)||(21356058-21356133)
chr6 (48-132)||(5572230-5572316)
chr6 (48-132)||(10077154-10077240)
chr6 (58-109)||(22709050-22709102)
chr6 (58-132)||(31086462-31086538)
chr6 (40-122)||(21801343-21801428)
chr6 (48-122)||(18232867-18232943)
chr6 (66-132)||(22963739-22963807)
chr6 (66-132)||(23824586-23824654)
chr6 (39-122)||(4629966-4630052)
chr6 (59-122)||(31979546-31979611)
chr6 (40-72)||(5343495-5343527)
[»] chr3 (46 HSPs)
chr3 (40-239)||(2676958-2677158)
chr3 (40-239)||(2672802-2673002)
chr3 (40-239)||(8512231-8512431)
chr3 (40-239)||(8517111-8517311)
chr3 (40-239)||(24968121-24968321)
chr3 (40-239)||(32475499-32475698)
chr3 (40-239)||(32480357-32480556)
chr3 (40-239)||(18656449-18656645)
chr3 (40-237)||(22173070-22173266)
chr3 (40-204)||(28503781-28503947)
chr3 (40-204)||(7167258-7167424)
chr3 (40-122)||(2671586-2671669)
chr3 (40-122)||(8477376-8477459)
chr3 (40-122)||(8739063-8739146)
chr3 (40-122)||(9091301-9091384)
chr3 (40-122)||(40372795-40372878)
chr3 (70-204)||(28501614-28501750)
chr3 (48-131)||(8370467-8370551)
chr3 (48-122)||(16264372-16264447)
chr3 (40-122)||(26928591-26928674)
chr3 (48-122)||(27974942-27975017)
chr3 (48-131)||(21711245-21711329)
chr3 (40-122)||(1305962-1306045)
chr3 (48-122)||(6794703-6794778)
chr3 (48-122)||(32143343-32143418)
chr3 (48-122)||(27452980-27453055)
chr3 (48-132)||(18552862-18552948)
chr3 (48-131)||(36029115-36029200)
chr3 (48-122)||(1736294-1736370)
chr3 (48-122)||(48438236-48438312)
chr3 (48-132)||(25795803-25795889)
chr3 (48-109)||(27986449-27986511)
chr3 (48-132)||(30709769-30709855)
chr3 (48-109)||(33386669-33386731)
chr3 (40-75)||(10207948-10207983)
chr3 (59-132)||(26299021-26299096)
chr3 (48-122)||(37466313-37466388)
chr3 (48-132)||(3323670-3323755)
chr3 (48-131)||(3715982-3716067)
chr3 (48-131)||(40592762-40592847)
chr3 (57-93)||(4386947-4386983)
chr3 (48-132)||(40844674-40844759)
chr3 (48-132)||(1417470-1417555)
chr3 (48-132)||(3328336-3328421)
chr3 (57-94)||(53894082-53894119)
chr3 (75-122)||(35925529-35925577)
[»] scaffold0197 (2 HSPs)
scaffold0197 (40-239)||(14180-14380)
scaffold0197 (40-239)||(19036-19236)
[»] chr8 (30 HSPs)
chr8 (40-239)||(10684135-10684335)
chr8 (40-239)||(35745405-35745605)
chr8 (40-239)||(39784697-39784893)
chr8 (40-237)||(25328154-25328349)
chr8 (40-237)||(7289801-7289997)
chr8 (40-204)||(6311311-6311476)
chr8 (40-204)||(36979391-36979557)
chr8 (40-204)||(30655660-30655826)
chr8 (40-122)||(33037807-33037889)
chr8 (40-204)||(18853084-18853251)
chr8 (40-204)||(18870478-18870645)
chr8 (40-122)||(4760075-4760158)
chr8 (40-122)||(10689143-10689226)
chr8 (48-122)||(4456050-4456125)
chr8 (40-122)||(1261954-1262037)
chr8 (40-109)||(26287915-26287985)
chr8 (40-109)||(26301172-26301242)
chr8 (40-109)||(26313166-26313236)
chr8 (48-122)||(7412363-7412438)
chr8 (48-122)||(19175754-19175829)
chr8 (48-122)||(31071229-31071304)
chr8 (48-110)||(26403242-26403305)
chr8 (48-132)||(6127243-6127329)
chr8 (48-122)||(19752394-19752469)
chr8 (48-90)||(9765852-9765894)
chr8 (48-131)||(23799567-23799652)
chr8 (48-95)||(4696624-4696671)
chr8 (48-132)||(5702472-5702558)
chr8 (57-90)||(18810982-18811015)
chr8 (193-237)||(25328028-25328070)
[»] chr7 (34 HSPs)
chr7 (40-239)||(24266073-24266273)
chr7 (40-239)||(24261194-24261394)
chr7 (40-239)||(16884943-16885143)
chr7 (40-239)||(16880087-16880287)
chr7 (40-239)||(19992327-19992525)
chr7 (40-239)||(21812111-21812309)
chr7 (40-225)||(24024212-24024397)
chr7 (40-237)||(31109459-31109654)
chr7 (40-237)||(12406345-12406541)
chr7 (40-237)||(12396925-12397121)
chr7 (40-122)||(2057979-2058062)
chr7 (40-204)||(1533360-1533527)
chr7 (40-122)||(20357548-20357630)
chr7 (40-122)||(18408777-18408860)
chr7 (40-110)||(4866744-4866814)
chr7 (40-122)||(21639822-21639905)
chr7 (40-122)||(18413654-18413736)
chr7 (40-122)||(21646020-21646103)
chr7 (57-122)||(44848684-44848750)
chr7 (48-122)||(21983306-21983383)
chr7 (48-131)||(29159825-29159910)
chr7 (48-122)||(2580412-2580487)
chr7 (48-122)||(9190008-9190083)
chr7 (48-132)||(2647685-2647771)
chr7 (48-132)||(20284111-20284196)
chr7 (57-132)||(33332439-33332516)
chr7 (48-131)||(46516300-46516385)
chr7 (48-122)||(49091683-49091759)
chr7 (48-132)||(55970-56055)
chr7 (57-132)||(35960847-35960924)
chr7 (57-122)||(2479368-2479433)
chr7 (48-90)||(28617258-28617300)
chr7 (57-132)||(4796656-4796733)
chr7 (57-132)||(23403003-23403079)
[»] chr5 (35 HSPs)
chr5 (40-239)||(31396862-31397064)
chr5 (40-239)||(2785389-2785589)
chr5 (40-239)||(33791330-33791530)
chr5 (40-239)||(31401719-31401921)
chr5 (40-225)||(37556508-37556693)
chr5 (40-225)||(37561330-37561515)
chr5 (40-239)||(28807448-28807643)
chr5 (40-239)||(33768193-33768398)
chr5 (40-225)||(15044700-15044885)
chr5 (40-237)||(1457037-1457233)
chr5 (40-237)||(43592293-43592489)
chr5 (40-237)||(43598738-43598934)
chr5 (40-237)||(43604230-43604426)
chr5 (40-237)||(43609722-43609918)
chr5 (40-237)||(27449828-27450024)
chr5 (39-204)||(30631419-30631586)
chr5 (40-237)||(27444984-27445180)
chr5 (40-204)||(31180228-31180393)
chr5 (40-122)||(38192187-38192270)
chr5 (40-122)||(38219412-38219495)
chr5 (43-122)||(35387679-35387759)
chr5 (48-122)||(9353332-9353407)
chr5 (48-122)||(36932350-36932425)
chr5 (58-122)||(15464564-15464629)
chr5 (40-122)||(24135862-24135945)
chr5 (57-122)||(12084175-12084241)
chr5 (48-131)||(10281773-10281858)
chr5 (48-132)||(28832281-28832366)
chr5 (48-122)||(14520252-14520327)
chr5 (48-122)||(3880321-3880397)
chr5 (48-122)||(11916971-11917047)
chr5 (57-132)||(42127400-42127476)
chr5 (48-95)||(17003988-17004035)
chr5 (48-90)||(4410241-4410283)
chr5 (58-122)||(19588778-19588844)
[»] chr1 (29 HSPs)
chr1 (40-239)||(43988333-43988535)
chr1 (40-239)||(25444963-25445160)
chr1 (40-239)||(39445514-39445710)
chr1 (40-239)||(1054886-1055082)
chr1 (40-239)||(44023748-44023944)
chr1 (44-237)||(41390599-41390790)
chr1 (44-237)||(41398254-41398445)
chr1 (125-239)||(25439770-25439882)
chr1 (40-204)||(24787281-24787447)
chr1 (40-122)||(24202769-24202852)
chr1 (48-122)||(26644897-26644972)
chr1 (48-122)||(3281730-3281805)
chr1 (40-122)||(19358843-19358926)
chr1 (40-122)||(19361432-19361515)
chr1 (40-122)||(19380072-19380155)
chr1 (57-122)||(21536569-21536635)
chr1 (57-131)||(27104362-27104438)
chr1 (57-122)||(13604623-13604689)
chr1 (48-132)||(16124505-16124591)
chr1 (48-132)||(19072950-19073036)
chr1 (48-132)||(19120840-19120926)
chr1 (48-131)||(47703926-47704011)
chr1 (48-119)||(37069792-37069864)
chr1 (60-132)||(47098814-47098887)
chr1 (48-122)||(29651833-29651909)
chr1 (48-122)||(32889461-32889536)
chr1 (48-132)||(13598420-13598506)
chr1 (48-131)||(9476283-9476368)
chr1 (48-110)||(775694-775757)
[»] scaffold0259 (1 HSPs)
scaffold0259 (40-239)||(2122-2322)
[»] scaffold0028 (1 HSPs)
scaffold0028 (40-239)||(148827-149027)
[»] chr2 (31 HSPs)
chr2 (40-239)||(19344435-19344636)
chr2 (40-239)||(19349293-19349494)
chr2 (42-239)||(32246804-32246999)
chr2 (40-225)||(39811874-39812059)
chr2 (40-171)||(44312563-44312695)
chr2 (40-204)||(11098844-11099010)
chr2 (40-122)||(14291502-14291585)
chr2 (40-122)||(3491764-3491847)
chr2 (40-122)||(9296401-9296484)
chr2 (39-122)||(25403646-25403730)
chr2 (40-122)||(25398509-25398592)
chr2 (48-122)||(28259177-28259252)
chr2 (48-132)||(13569350-13569436)
chr2 (57-122)||(25407653-25407719)
chr2 (40-131)||(8040073-8040169)
chr2 (48-131)||(10445434-10445519)
chr2 (48-131)||(34388880-34388965)
chr2 (48-122)||(42039669-42039744)
chr2 (59-131)||(34682324-34682398)
chr2 (40-109)||(40738857-40738926)
chr2 (57-132)||(17865234-17865311)
chr2 (40-122)||(21629957-21630041)
chr2 (57-131)||(8390140-8390216)
chr2 (48-122)||(23078470-23078545)
chr2 (48-132)||(14698997-14699082)
chr2 (48-131)||(10707242-10707327)
chr2 (57-132)||(31056075-31056152)
chr2 (48-122)||(20522242-20522318)
chr2 (48-122)||(36757762-36757837)
chr2 (48-132)||(33118158-33118244)
chr2 (48-132)||(39482953-39483039)
[»] scaffold0464 (1 HSPs)
scaffold0464 (40-239)||(377-573)
[»] chr4 (27 HSPs)
chr4 (40-239)||(3814038-3814234)
chr4 (40-239)||(18855741-18855937)
chr4 (40-239)||(5732679-5732875)
chr4 (40-239)||(45357170-45357367)
chr4 (40-239)||(45347690-45347888)
chr4 (40-225)||(9224292-9224478)
chr4 (40-225)||(9229079-9229265)
chr4 (40-237)||(51520471-51520667)
chr4 (40-204)||(24741954-24742120)
chr4 (40-158)||(56146664-56146782)
chr4 (40-122)||(29760655-29760738)
chr4 (48-131)||(36315220-36315304)
chr4 (48-131)||(36329429-36329513)
chr4 (48-122)||(5396671-5396746)
chr4 (48-132)||(10047401-10047487)
chr4 (40-109)||(28468542-28468612)
chr4 (48-122)||(39246016-39246092)
chr4 (57-122)||(16623292-16623359)
chr4 (48-122)||(31985634-31985708)
chr4 (59-132)||(38152428-38152503)
chr4 (57-122)||(3777580-3777646)
chr4 (48-110)||(5143281-5143344)
chr4 (59-132)||(16630669-16630744)
chr4 (48-110)||(24333831-24333894)
chr4 (48-109)||(5269204-5269266)
chr4 (48-131)||(3796509-3796594)
chr4 (48-122)||(5147699-5147775)
[»] scaffold0355 (2 HSPs)
scaffold0355 (40-239)||(9517-9713)
scaffold0355 (113-225)||(3734-3845)
[»] scaffold0135 (1 HSPs)
scaffold0135 (40-225)||(34947-35133)
[»] scaffold0009 (2 HSPs)
scaffold0009 (151-239)||(176848-176936)
scaffold0009 (40-102)||(181973-182035)
[»] scaffold0188 (2 HSPs)
scaffold0188 (40-122)||(17952-18035)
scaffold0188 (40-122)||(24045-24128)
[»] scaffold0140 (1 HSPs)
scaffold0140 (48-122)||(8419-8494)
[»] scaffold0087 (2 HSPs)
scaffold0087 (62-122)||(43961-44022)
scaffold0087 (48-122)||(36832-36907)
[»] scaffold0036 (1 HSPs)
scaffold0036 (40-131)||(85696-85789)
[»] scaffold0006 (3 HSPs)
scaffold0006 (57-122)||(133280-133346)
scaffold0006 (48-132)||(5705-5791)
scaffold0006 (48-110)||(2514-2577)
[»] scaffold0148 (1 HSPs)
scaffold0148 (48-122)||(10751-10827)
[»] scaffold0098 (1 HSPs)
scaffold0098 (57-95)||(45284-45322)
[»] scaffold0154 (1 HSPs)
scaffold0154 (57-90)||(11500-11533)


Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 33330516 - 33330316
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaa-gagttacaagaatctagcttatcaagct 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33330516 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaaagagttacaagaatctagcttatcaagct 33330417  T
Q  139 ttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33330416 ttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 33330317  T
Q  239 a 239  Q
    |    
T  33330316 a 33330316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 33336013 - 33335813
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaa-gagttacaagaatctagcttatcaagct 138  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33336013 cagttcagccaatgtgacctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaaagagttacaagaatctagcttatcaagct 33335914  T
Q  139 ttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33335913 ttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 33335814  T
Q  239 a 239  Q
    |    
T  33335813 a 33335813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 16838758 - 16838958
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaa-gagttacaagaatctagcttatcaagct 138  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||    
T  16838758 cagttcagccaatgtggcttaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaaagagttacaagaatctagctattcaagct 16838857  T
Q  139 ttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 238  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16838858 ttacacatgaacaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 16838957  T
Q  239 a 239  Q
    |    
T  16838958 a 16838958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 6005431 - 6005631
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaa-gagttacaagaatctagcttatcaagct 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  6005431 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaaagagttacaagaatctagcttttcaagct 6005530  T
Q  139 ttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 238  Q
    ||||||||||  |||||||||| ||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  6005531 ttacacatgaacaaaccctagacctaccctttggtattttcccaccctcacactatgaacccataatcccaaggtgattacaatgttgttttcccaacct 6005630  T
Q  239 a 239  Q
    |    
T  6005631 a 6005631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 28155640 - 28155444
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||||| |||||| ||||||||    
T  28155640 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagaatttagctt-tcaagctt 28155542  T
Q  140 tacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaaccta 239  Q
    |||||||||  ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  28155541 tacacatgaacaaaccctagatctaccctttggtattttcccactctcacactatgaaccctaaatcccaaggtgattacaatgt--ttttcccaaccta 28155444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 6438515 - 6438711
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||| |||||||| ||||||||    
T  6438515 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgtgaa-gtgttacaaaaggttacaagactctagcttgtcaagctt 6438613  T
Q  140 tacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaaccta 239  Q
    |||||||||  |||||||||| |||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||  |||||||||||||    
T  6438614 tacacatgaacaaaccctagaactaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgt--ttttcccaaccta 6438711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 40 - 237
Target Start/End: Complemental strand, 14737647 - 14737452
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||| |||||| | ||||||||    
T  14737647 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagactctagcct-tcaagctt 14737549  T
Q  140 tacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacc 237  Q
    |||| ||||  |||||||||| ||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||  |||||||||||    
T  14737548 tacatatgaacaaaccctagattctaccctttggtattttcccactctcacactatgaaccctaaaacccaaggtgattacaatgt--ttttcccaacc 14737452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 40 - 235
Target Start/End: Original strand, 28184519 - 28184714
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||  ||||||| | |||||| | ||||||||    
T  28184519 cagttcagccaatatggcctaatctgggggagagagcagctctccaatctaatatgagaaagtgttacaaaaggttacaacactctagcct-tcaagctt 28184617  T
Q  140 tacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaa 235  Q
    |||||||||  |||||||||| ||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||| ||||| |||||||||    
T  28184618 tacacatgaacaaaccctagattctaccctttggtattttcccactctcacactatgaaccctaaaacccaaggtgattactatgtttttttcccaa 28184714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 40 - 237
Target Start/End: Complemental strand, 22010768 - 22010572
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaa-tctagcttatcaagct 138  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  |||||||||| |||||| | |||||||    
T  22010768 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagaactctagcct-tcaagct 22010670  T
Q  139 ttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacc 237  Q
    ||||||||||  |||||||||| ||||||||||| ||||| ||||  |||||| ||||||||||||| |||||||||||||||||||  |||||||||||    
T  22010669 ttacacatgaacaaaccctagattctaccctttgatatttccccactctcacaatatgaaccctaaaacccaaggtgattacaatgt--ttttcccaacc 22010572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 40 - 237
Target Start/End: Complemental strand, 14742507 - 14742312
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    ||||||||||||| || |||||| |||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||| |||||| | ||||||||    
T  14742507 cagttcagccaatatgacctaatttgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagactctagcct-tcaagctt 14742409  T
Q  140 tacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacc 237  Q
    |||| ||||  |||||||||| ||||||||||||||||||||||  |||||||||||||||||||| ||||| |||||||||||||  |||||||||||    
T  14742408 tacatatgaacaaaccctagattctaccctttggtattttcccactctcacactatgaaccctaaaacccaaagtgattacaatgt--ttttcccaacc 14742312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 40 - 237
Target Start/End: Original strand, 11856988 - 11857184
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaa-tctagcttatcaagct 138  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||  |||||||||| |||||| | |||||||    
T  11856988 cagttcagccaatatggcctaatatgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagaactctagcct-tcaagct 11857086  T
Q  139 ttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacc 237  Q
    ||||||||||  |||||||||| ||||||||||||| ||| ||||  |||||| ||||||||||||| |||||||||||||||||||  |||||||||||    
T  11857087 ttacacatgaacaaaccctagattctaccctttggtgtttccccactctcacaatatgaaccctaaaacccaaggtgattacaatgt--ttttcccaacc 11857184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 5674853 - 5674770
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||    
T  5674853 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgatgaaagtgttacaaagggttacaagaa 5674770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 5343628 - 5343691
Alignment:
Q  176 tttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaaccta 239  Q
    ||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  5343628 tttcccaacctcacactatgaacccataatcccaaggtgattacaatgttgttttcccaaccta 5343691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 5757553 - 5757478
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  5757553 ccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaagagttacaagaa 5757478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 21356058 - 21356133
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| || |||||||||| ||||||||||||||||||||||| |||| |||| ||||||| ||||||||||||||    
T  21356058 ccaatatgacctaatctggaggagagagcagctctccaatccactatgatgaaagtgttactaagagttacaagaa 21356133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 5572316 - 5572230
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagcttat 132  Q
    ||||| || |||||||| |||||||||||||| |||||||||| |||| |||| ||||||| |||||||||||||||  ||||||||    
T  5572316 ccaatatgacctaatctaggggagagagcagccctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagcttat 5572230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 10077240 - 10077154
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagcttat 132  Q
    ||||| || ||||||||||||||||||||||| |||||||||| |||| |||| ||||||| ||| |||||||||||  ||||||||    
T  10077240 ccaatatgacctaatctgggggagagagcagccctccaatccactatgatgaaagtgttacaaaaaagttacaagaaattagcttat 10077154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 22709050 - 22709102
Alignment:
Q  58 ctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaa 109  Q
    ||||||||||||||||||||||||||||||||| |||| |||| |||||||||    
T  22709050 ctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaa 22709102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 31086538 - 31086462
Alignment:
Q  58 ctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaa-gagttacaagaatctagcttat 132  Q
    ||||||| |||||||||||| |||||||||||| |||| |||| |||||||||| ||||||||||||  ||||||||    
T  31086538 ctaatctaggggagagagcaactctccaatccactatgatgaaagtgttacaaaggagttacaagaaattagcttat 31086462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 21801428 - 21801343
Alignment:
Q  40 cagttcag-ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaa 122  Q
    |||||||| ||||| || ||||||||||||||| |||||||||||||||||| || | | || ||||||| |||||||||||||||    
T  21801428 cagttcagtccaatatgacctaatctgggggagcgagcagctctccaatccactaagataaaagtgttacaaaagagttacaagaa 21801343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 18232867 - 18232943
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaa 122  Q
    ||||| || ||||||||||||||||||||| | ||||||| || |||| |||| ||||||| |||||||||||||||    
T  18232867 ccaatatgacctaatctgggggagagagcaaccctccaattcactatgatgaaagtgttacaaaagagttacaagaa 18232943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 22963739 - 22963807
Alignment:
Q  66 ggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagcttat 132  Q
    |||||||||||||| |||||||||| |||| |||| ||||||| |||||||||||||||  ||||||||    
T  22963739 ggggagagagcagccctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagcttat 22963807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 23824654 - 23824586
Alignment:
Q  66 ggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagcttat 132  Q
    |||||||||||||| |||||||||| |||| |||| ||||||| |||||||||||||||  ||||||||    
T  23824654 ggggagagagcagccctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagcttat 23824586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 4629966 - 4630052
Alignment:
Q  39 tcagttcag-ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaa 122  Q
    ||||||||| ||||| || |||||||| ||| ||||||||||||||||||||| || | |||| ||||||| ||| |||||||||||    
T  4629966 tcagttcagtccaatatgacctaatctagggaagagagcagctctccaatccactaagatgaaagtgttacaaaatagttacaagaa 4630052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 122
Target Start/End: Original strand, 31979546 - 31979611
Alignment:
Q  59 taatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaa 122  Q
    ||||||||||||||||||||| |||||||||| || | |||| ||||| | |||||||||||||||    
T  31979546 taatctgggggagagagcagccctccaatccactaagatgaaagtgttgcaaaagagttacaagaa 31979611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 5343495 - 5343527
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggaga 72  Q
    ||||||||||||||||||||||||| |||||||    
T  5343495 cagttcagccaatgtggcctaatctaggggaga 5343527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 46)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 2677158 - 2676958
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaa-gagttacaagaatctagcttatcaagct 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2677158 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaaagagttacaagaatctagcttatcaagct 2677059  T
Q  139 ttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2677058 ttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 2676959  T
Q  239 a 239  Q
    |    
T  2676958 a 2676958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 2673002 - 2672802
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaa-gagttacaagaatctagcttatcaagct 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2673002 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaaagagttacaagaatctagcttatcaagct 2672903  T
Q  139 ttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2672902 ttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccttaaatcccaaggtgattacaatgttgttttcccaacct 2672803  T
Q  239 a 239  Q
    |    
T  2672802 a 2672802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 8512231 - 8512431
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaa-gagttacaagaatctagcttatcaagct 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8512231 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaaagagttacaagaatctagcttatcaagct 8512330  T
Q  139 ttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 238  Q
    ||||||| |||||||||||||| ||||||||||||| ||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  8512331 ttacacaagacaaaaccctagacctaccctttggtaatttcccaacctcacactatgaacccataatcccaaggtgattacaatgttgttttcccaacct 8512430  T
Q  239 a 239  Q
    |    
T  8512431 a 8512431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 8517111 - 8517311
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaa-gagttacaagaatctagcttatcaagct 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8517111 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaaagagttacaagaatctagcttatcaagct 8517210  T
Q  139 ttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 238  Q
    ||||||| |||||||||||||| ||||||||||||| ||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  8517211 ttacacaagacaaaaccctagacctaccctttggtaatttcccaacctcacactatgaacccataatcccaaggtgattacaatgttgttttcccaacct 8517310  T
Q  239 a 239  Q
    |    
T  8517311 a 8517311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 24968121 - 24968321
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaa-gagttacaagaatctagcttatcaagct 138  Q
    |||||||||||||||||| |||| | |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||    
T  24968121 cagttcagccaatgtggcttaattttggggagagagtagctctccaatccaatatgtgaatgtgttacaaaagagttacaagaatctagctattcaagct 24968220  T
Q  139 ttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 238  Q
    ||||||||||  |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24968221 ttacacatgaacaaacccgagatctaccctttggtactttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 24968320  T
Q  239 a 239  Q
    |    
T  24968321 a 24968321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 32475499 - 32475698
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32475499 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgt-ttacaaagagttacaagaatctagcttatcaagctt 32475597  T
Q  140 tacacatgacaaaaccctagatctaccctttggt-attttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 238  Q
    |||||| |||||||||||||| |||||||||| | | ||||||| |||||||||||||||||  ||||||||| ||||||||||||||||||||||||||    
T  32475598 tacacaagacaaaaccctagacctaccctttgataaatttcccaacctcacactatgaacccataatcccaagatgattacaatgttgttttcccaacct 32475697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 32480357 - 32480556
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32480357 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgt-ttacaaagagttacaagaatctagcttatcaagctt 32480455  T
Q  140 tacacatgacaaaaccctagatctaccctttggt-attttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 238  Q
    |||||| |||||||||||||| |||||||||| | | ||||||| |||||||||||||||||  ||||||||| ||||||||||||||||||||||||||    
T  32480456 tacacaagacaaaaccctagacctaccctttgataaatttcccaacctcacactatgaacccataatcccaagatgattacaatgttgttttcccaacct 32480555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 18656449 - 18656645
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||| |||||| | ||||||||    
T  18656449 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagactctagcat-tcaagctt 18656547  T
Q  140 tacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaaccta 239  Q
    |||||||||  ||||||||||||||||||||||||||||||||  |||||||||| |||||| ||||||||||||||||||||||  |||||||||||||    
T  18656548 tacacatgaacaaaccctagatctaccctttggtattttcccactctcacactataaacccttaatcccaaggtgattacaatgt--ttttcccaaccta 18656645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 40 - 237
Target Start/End: Complemental strand, 22173266 - 22173070
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaa-tctagcttatcaagct 138  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  |||||||||| |||||| | |||||||    
T  22173266 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagaactctagcct-tcaagct 22173168  T
Q  139 ttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacc 237  Q
    ||||||||||  |||||||||| ||||||||||||| ||| ||||  |||  | ||||||||||||| |||||||||||||||||||  |||||||||||    
T  22173167 ttacacatgaacaaaccctagattctaccctttggtgtttccccactctcctaatatgaaccctaaaacccaaggtgattacaatgt--ttttcccaacc 22173070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 40 - 204
Target Start/End: Complemental strand, 28503947 - 28503781
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaa--tctagcttatcaagc 137  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||  ||||||||||  |||||| | ||||||    
T  28503947 cagttcagccaatatggcctaatctggggaagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagaaactctagcct-tcaagc 28503849  T
Q  138 tttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaa 204  Q
    |||||||| ||  |||||||||| ||||||||||||| ||| ||||  |||||| |||||||||||||    
T  28503848 tttacacaagaataaaccctagattctaccctttggtgtttccccactctcacaatatgaaccctaaa 28503781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 40 - 204
Target Start/End: Original strand, 7167258 - 7167424
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaatc--tagcttatcaag 136  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||| |  |||| | |||||    
T  7167258 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgatgaaagtgttacaaagggttacaagaaacaatagcct-tcaag 7167356  T
Q  137 ctttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaa 204  Q
    | ||||||| ||  |||||||||| ||||||||||||||||| ||||  |||||| |||||||||||||    
T  7167357 c-ttacacaagaacaaaccctagattctaccctttggtatttccccactctcacaatatgaaccctaaa 7167424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 2671669 - 2671586
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||    
T  2671669 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgatgaaagtgttacaaagggttacaagaa 2671586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 8477376 - 8477459
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||    
T  8477376 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgatgaaagtgttacaaagggttacaagaa 8477459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 8739146 - 8739063
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||    
T  8739146 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgatgaaagtgttacaaagggttacaagaa 8739063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 9091384 - 9091301
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||    
T  9091384 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgatgaaagtgttacaaagggttacaagaa 9091301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 40372878 - 40372795
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||    
T  40372878 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgatgaaagtgttacaaagggttacaagaa 40372795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 70 - 204
Target Start/End: Complemental strand, 28501750 - 28501614
Alignment:
Q  70 agagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaa--tctagcttatcaagctttacacatgacaaaaccctaga-tctacc 166  Q
    |||||||||||||||||||||||||| ||| ||||||||||  ||||||||||  |||||| | |||||||||||||| ||  |||||||||| ||||||    
T  28501750 agagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagaaactctagcct-tcaagctttacacaagaataaaccctagattctacc 28501652  T
Q  167 ctttggtattttcccatcctcacactatgaaccctaaa 204  Q
    ||||||| ||| ||||  |||||| |||||||||||||    
T  28501651 ctttggtgtttccccactctcacaatatgaaccctaaa 28501614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 8370551 - 8370467
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaatctagctta 131  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||  |||||||    
T  8370551 ccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaagagttacaagaaattagctta 8370467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 16264372 - 16264447
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  16264372 ccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaagagttacaagaa 16264447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 26928674 - 26928591
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||| || ||||||||||||||||||||| |||||||||||| |||| |||| ||||||||||| ||||||||||    
T  26928674 cagttcagccaatatgacctaatctgggggagagagcaactctccaatccactatgatgaaagtgttacaaagggttacaagaa 26928591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 27975017 - 27974942
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  27975017 ccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaagagttacaagaa 27974942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 21711245 - 21711329
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaatctagctta 131  Q
    ||||| || ||||||||||||||||||||||||||| |||||| |||| |||| ||||||||||||||||||||||  |||||||    
T  21711245 ccaatatgacctaatctgggggagagagcagctctcaaatccactatgatgaaagtgttacaaagagttacaagaaattagctta 21711329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 1305962 - 1306045
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||| ||||||||||| ||||||| ||||||||||||||||| || | |||| ||||||||||| ||||||||||    
T  1305962 cagttcagccaatatggcctaatctaggggagatagcagctctccaatccactacgatgaaagtgttacaaagggttacaagaa 1306045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 6794778 - 6794703
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| || |||||| ||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  6794778 ccaatatgacctaatatgggggagagagcagctctccaatccactatgatgaaagtgttacaaagagttacaagaa 6794703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 32143343 - 32143418
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||    
T  32143343 ccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaagggttacaagaa 32143418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 27452980 - 27453055
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| || ||||||| |||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||    
T  27452980 ccaatatgacctaatccgggggagagagcagctctccaatccactatgatgaaagtgttacaaagggttacaagaa 27453055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 18552948 - 18552862
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagcttat 132  Q
    ||||| || ||||||||||||||||||||||| |||||||||| |||| |||| ||||||| |||||||||||||||  ||||||||    
T  18552948 ccaatatgacctaatctgggggagagagcagccctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagcttat 18552862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 36029115 - 36029200
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagctta 131  Q
    ||||| || |||||||||||||||| ||||||||||||||||| |||| |||| ||||||| |||||||||||||||  |||||||    
T  36029115 ccaatatgacctaatctgggggagaaagcagctctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagctta 36029200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 1736370 - 1736294
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaa 122  Q
    ||||| || ||||||||||||||||||||||| |||||||||| |||| |||| ||||||| |||||||||||||||    
T  1736370 ccaatatgacctaatctgggggagagagcagccctccaatccactatgatgaaagtgttacaaaagagttacaagaa 1736294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 48438236 - 48438312
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaa 122  Q
    ||||| || ||||||||||||||||||||||| |||||||||| |||| |||| ||||||| |||||||||||||||    
T  48438236 ccaatatgacctaatctgggggagagagcagccctccaatccactatgatgaaagtgttacaaaagagttacaagaa 48438312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 25795803 - 25795889
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagcttat 132  Q
    ||||| || |||||||||||||||||||||||||||||||| | || | |||| ||||||| |||||||||||||||  ||||||||    
T  25795803 ccaatatgacctaatctgggggagagagcagctctccaatctactaagatgaaagtgttacgaaagagttacaagaaattagcttat 25795889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 27986511 - 27986449
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaa 109  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||| |||| |||||||||    
T  27986511 ccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaa 27986449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 30709855 - 30709769
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagcttat 132  Q
    ||||| || ||||||||||||||||||||||| |||||||||| |||| ||||  |||||| |||||||||||||||  ||||||||    
T  30709855 ccaatatgacctaatctgggggagagagcagccctccaatccactatgatgaaattgttacaaaagagttacaagaaattagcttat 30709769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 33386731 - 33386669
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaa 109  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||| |||| |||||||||    
T  33386731 ccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaa 33386669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 75
Target Start/End: Original strand, 10207948 - 10207983
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagag 75  Q
    ||||||||||||||||||||||||||||||||||||    
T  10207948 cagttcagccaatgtggcctaatctgggggagagag 10207983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 26299021 - 26299096
Alignment:
Q  59 taatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagcttat 132  Q
    ||||||||||||||||||||| |||||||| | |||| |||| ||||||| |||||||||||||||  ||||||||    
T  26299021 taatctgggggagagagcagccctccaatctactatgatgaaagtgttacaaaagagttacaagaaattagcttat 26299096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 37466313 - 37466388
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| || ||||||||||||||||||| ||| |||||||||| || | |||| ||||||||| ||||||||||||    
T  37466313 ccaatatgacctaatctgggggagagagtagccctccaatccactaagatgaaagtgttacaatgagttacaagaa 37466388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 3323755 - 3323670
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaatctagcttat 132  Q
    ||||| || ||||||||||| |||||| |||| |||||||||| || | |||| ||||||||| ||||||||||||  ||||||||    
T  3323755 ccaatatgacctaatctgggagagagaacagccctccaatccactaagatgaaagtgttacaatgagttacaagaaattagcttat 3323670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 3716067 - 3715982
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagctta 131  Q
    ||||| || |||||||| || |||||||||||||||||||| | |||| |||| ||||||| |||||||||||||||  |||||||    
T  3716067 ccaatatgacctaatctaggagagagagcagctctccaatctactatgatgaaagtgttacaaaagagttacaagaaattagctta 3715982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 40592847 - 40592762
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagctta 131  Q
    ||||| || ||||||||| ||||||||| |||||||||||| | |||| |||| ||||||| |||||||||||||||  |||||||    
T  40592847 ccaatatgacctaatctgtgggagagagaagctctccaatcgactatgatgaaagtgttacaaaagagttacaagaaattagctta 40592762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 4386983 - 4386947
Alignment:
Q  57 cctaatctgggggagagagcagctctccaatccaata 93  Q
    |||| ||||||||||||||||||||||||||||||||    
T  4386983 cctactctgggggagagagcagctctccaatccaata 4386947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 40844674 - 40844759
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagcttat 132  Q
    ||||| || |||||||||||| |||||||||| ||| |||||| |||| |||| ||||||| |||||||||||||||  ||||||||    
T  40844674 ccaatatgacctaatctgggg-agagagcagccctcaaatccactatgatgaaagtgttacaaaagagttacaagaaattagcttat 40844759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 1417555 - 1417470
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaatctagcttat 132  Q
    ||||| || ||||||||||||||||||||| | |||||||||| || |  ||| ||||||||| |||||| |||||  ||||||||    
T  1417555 ccaatatgacctaatctgggggagagagcatccctccaatccactaagaagaaagtgttacaatgagttataagaaattagcttat 1417470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 3328421 - 3328336
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaatctagcttat 132  Q
    ||||| || |||||||| | |||||||||||| || ||||||| || | |||| ||||||||| ||||||||||||  ||||||||    
T  3328421 ccaatatgacctaatctagaggagagagcagcccttcaatccactaagatgaaagtgttacaatgagttacaagaaattagcttat 3328336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 53894082 - 53894119
Alignment:
Q  57 cctaatctgggggagagagcagctctccaatccaatat 94  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  53894082 cctagtctgggggagagagcagccctccaatccaatat 53894119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 35925529 - 35925577
Alignment:
Q  75 gcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    |||| ||||||||||| |||| |||| ||||||||||||||||||||||    
T  35925529 gcagttctccaatccactatgatgaaagtgttacaaagagttacaagaa 35925577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 14380 - 14180
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaa-gagttacaagaatctagcttatcaagct 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14380 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaaagagttacaagaatctagcttatcaagct 14281  T
Q  139 ttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 238  Q
    ||||||| |||||||||||||| ||||||||||||| ||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  14280 ttacacaagacaaaaccctagacctaccctttggtaatttcccaacctcacactatgaacccataatcccaaggtgattacaatgttgttttcccaacct 14181  T
Q  239 a 239  Q
    |    
T  14180 a 14180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 19236 - 19036
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaa-gagttacaagaatctagcttatcaagct 138  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  19236 cagttcagccattgtggcctaatctgggggagagagcagctctccaatacaatatgtgagtgtgttacaaaagagttacaagaatctagcttatcaagct 19137  T
Q  139 ttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 238  Q
    ||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||  ||| ||||||||||||||||||||||||||||||||    
T  19136 ttacacaagacaaaaccctagatctaccctttggtaatttcccaacctcacactatgaacccataattccaaggtgattacaatgttgttttcccaacct 19037  T
Q  239 a 239  Q
    |    
T  19036 a 19036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 10684335 - 10684135
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaa-gagttacaagaatctagcttatcaagct 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10684335 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaaagagttacaagaatctagcttatcaagct 10684236  T
Q  139 ttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 238  Q
    ||||||| |||||||||||||| ||||||||||||| ||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  10684235 ttacacaagacaaaaccctagacctaccctttggtaatttcccaacctcacactatgaacccataatcccaaggtgattacaatgttgttttcccaacct 10684136  T
Q  239 a 239  Q
    |    
T  10684135 a 10684135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 35745405 - 35745605
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaa-gagttacaagaatctagcttatcaagct 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  35745405 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaaagagttacaagaatctagcttttcaagct 35745504  T
Q  139 ttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 238  Q
    ||||||||||  |||||||||| ||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  35745505 ttacacatgaacaaaccctagacctaccctttggtattttcccaccctcacactatgaacccataatcccaaggtgattacaatgttgttttcccaacct 35745604  T
Q  239 a 239  Q
    |    
T  35745605 a 35745605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 39784893 - 39784697
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||| |||||||||||||||||    
T  39784893 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgtgaa-gtgttacaaaaggttacaagactctagcttatcaagctt 39784795  T
Q  140 tacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaaccta 239  Q
    |||||||||  |||||||||| |||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||  |||||||||||||    
T  39784794 tacacatgaacaaaccctagaactaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgt--ttttcccaaccta 39784697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 40 - 237
Target Start/End: Complemental strand, 25328349 - 25328154
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||| |||||| | ||||||||    
T  25328349 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagactctagcct-tcaagctt 25328251  T
Q  140 tacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacc 237  Q
    |||||||||  |||||||||| ||||||||||||| ||| ||||  ||||||  |||||||||||| |||||||||||||||||||  |||||||||||    
T  25328250 tacacatgaacaaaccctagattctaccctttggtgtttccccactctcacaacatgaaccctaaaacccaaggtgattacaatgt--ttttcccaacc 25328154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 40 - 237
Target Start/End: Complemental strand, 7289997 - 7289801
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaa-tctagcttatcaagct 138  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  |||||||||| |||||| | |||||||    
T  7289997 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagaactctagcct-tcaagct 7289899  T
Q  139 ttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacc 237  Q
    ||||||||||  |||||||| | ||||||||||||| ||| ||||  |||||| ||||||||||||| |||||||||||||||||||  |||||||||||    
T  7289898 ttacacatgaacaaaccctatattctaccctttggtgtttccccactctcacaatatgaaccctaaaacccaaggtgattacaatgt--ttttcccaacc 7289801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 40 - 204
Target Start/End: Original strand, 6311311 - 6311476
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaa--tctagcttatcaagc 137  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||||  |||||| | ||||||    
T  6311311 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagaaactctagcct-tcaagc 6311409  T
Q  138 tttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaa 204  Q
    |||||||| ||| |||||||||| ||||||||||||| ||| ||||  ||||||  ||||||||||||    
T  6311410 tttacacaagac-aaaccctagattctaccctttggtgtttccccactctcacaagatgaaccctaaa 6311476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 40 - 204
Target Start/End: Original strand, 36979391 - 36979557
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaatc--tagcttatcaag 136  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||| |  |||| | |||||    
T  36979391 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgatgaaagtgttacaaagggttacaagaaacaatagcct-tcaag 36979489  T
Q  137 ctttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaa 204  Q
    | ||||||| ||  |||||||||| ||||||||||||| ||| ||||  |||||| |||||||||||||    
T  36979490 c-ttacacaagaacaaaccctagattctaccctttggtgtttccccactctcacaatatgaaccctaaa 36979557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 204
Target Start/End: Original strand, 30655660 - 30655826
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaatc--tagcttatcaag 136  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| |||||||||| |  |||| | |||||    
T  30655660 cagttcagccaatatggcctaatctgggggagagagcagctctccaatctaatatgatgaaagtgttacaaagggttacaagaaacaatagcct-tcaag 30655758  T
Q  137 ctttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaa 204  Q
    | ||||||| ||  |||||||||| ||||||||||||| ||| ||||  |||||| |||||||||||||    
T  30655759 c-ttacacaagaacaaaccctagattctaccctttggtgtttccccactctcacaatatgaaccctaaa 30655826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 33037889 - 33037807
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||    
T  33037889 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaagggttacaagaa 33037807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 204
Target Start/End: Complemental strand, 18853251 - 18853084
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatat-gtgaatgtgttac-aaagagttacaagaatc--tagcttatcaa 135  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||| ||||||| |||| |||||||||| |  |||| | ||||    
T  18853251 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatataatgaaagtgttacaaaagggttacaagaaacaatagcat-tcaa 18853153  T
Q  136 gctttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaa 204  Q
    || ||||||| ||  |||||||||| | ||||||||||||||| ||||  |||||| |||||||||||||    
T  18853152 gc-ttacacaagaacaaaccctagattttaccctttggtatttccccactctcacaatatgaaccctaaa 18853084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 204
Target Start/End: Complemental strand, 18870645 - 18870478
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatat-gtgaatgtgttac-aaagagttacaagaatc--tagcttatcaa 135  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||  |||| ||||||| |||| |||||||||| |  |||| | ||||    
T  18870645 cagttcatccaatatggcctaatctgggggagagagcagctctccaatccaatataatgaaagtgttacaaaagggttacaagaaacaatagcat-tcaa 18870547  T
Q  136 gctttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaa 204  Q
    || ||||||| ||  |||||||||| ||||||||||||||||| ||||  |||||| |||||||||||||    
T  18870546 gc-ttacacaagaacaaaccctagattctaccctttggtatttccccactctcacaatatgaaccctaaa 18870478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 4760158 - 4760075
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||    
T  4760158 cagttcagccaatatggcctaatatgggggagagagcagctctccaatccaatatgatgaaagtgttacaaagggttacaagaa 4760075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 10689226 - 10689143
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||| || ||||||||||    
T  10689226 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgatgaaagtgttacagagggttacaagaa 10689143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 4456050 - 4456125
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  4456050 ccaatatggcctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaagagttacaagaa 4456125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 1262037 - 1261954
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||||| ||||| || |||||||||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||    
T  1262037 cagttcaaccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaagggttacaagaa 1261954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 26287915 - 26287985
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaa 109  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||    
T  26287915 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaa 26287985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 26301172 - 26301242
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaa 109  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||    
T  26301172 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaa 26301242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 26313166 - 26313236
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaa 109  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||    
T  26313166 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaa 26313236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 7412363 - 7412438
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| || |||||| ||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  7412363 ccaatatgacctaatatgggggagagagcagctctccaatccactatgatgaaagtgttacaaagagttacaagaa 7412438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 19175829 - 19175754
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| || ||||||||||||||||||||| |||||||||||| |||| |||| ||||||||||||||||||||||    
T  19175829 ccaatatgacctaatctgggggagagagcaactctccaatccactatgatgaaagtgttacaaagagttacaagaa 19175754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 31071304 - 31071229
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||    
T  31071304 ccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaagggttacaagaa 31071229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 26403305 - 26403242
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaa 110  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||| |||| ||||||||||    
T  26403305 ccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaa 26403242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 6127243 - 6127329
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagcttat 132  Q
    ||||| || |||||| ||||| ||||||||||||||||||||| |||| |||| ||||||| |||||||||||||||  ||||||||    
T  6127243 ccaatatgacctaatttggggaagagagcagctctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagcttat 6127329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 19752469 - 19752394
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| || |||| ||| ||||||||||||||||||||||||| || | |||| ||||||||| ||||||||||||    
T  19752469 ccaatatgacctagtctaggggagagagcagctctccaatccactaagatgaaagtgttacaatgagttacaagaa 19752394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 9765894 - 9765852
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatcca 90  Q
    ||||| || ||||||||||||||||||||||||||||||||||    
T  9765894 ccaatatgacctaatctgggggagagagcagctctccaatcca 9765852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 23799652 - 23799567
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagctta 131  Q
    ||||| || |||||| ||| |||||||||||| |||||||||| |||| |||| ||||||| |||||||||||||||  |||||||    
T  23799652 ccaatatgacctaatttggaggagagagcagccctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagctta 23799567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 4696671 - 4696624
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg 95  Q
    ||||| || ||||||||||||||||||||||| |||||||||| ||||    
T  4696671 ccaatatgacctaatctgggggagagagcagccctccaatccactatg 4696624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 5702558 - 5702472
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagcttat 132  Q
    ||||| || |||||| |||||||||||||| | |||||||||  |||| |||| ||||||| |||||||||||||||  ||||||||    
T  5702558 ccaatatgacctaatatgggggagagagcatccctccaatcccctatgatgaaagtgttacaaaagagttacaagaaattagcttat 5702472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 90
Target Start/End: Complemental strand, 18811015 - 18810982
Alignment:
Q  57 cctaatctgggggagagagcagctctccaatcca 90  Q
    ||||||||||||||||||||||| ||||||||||    
T  18811015 cctaatctgggggagagagcagccctccaatcca 18810982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 25328070 - 25328028
Alignment:
Q  193 atgaaccctaaatcccaaggtgattacaatgttgttttcccaacc 237  Q
    |||||||||||| |||||||||||||||||||  |||||||||||    
T  25328070 atgaaccctaaaacccaaggtgattacaatgt--ttttcccaacc 25328028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 24266273 - 24266073
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaa-gagttacaagaatctagcttatcaagct 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24266273 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaaagagttacaagaatctagcttatcaagct 24266174  T
Q  139 ttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 238  Q
    ||||||| |||||||||||||| ||||||||||||| ||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  24266173 ttacacaagacaaaaccctagacctaccctttggtaatttcccaacctcacactatgaacccataatcccaaggtgattacaatgttgttttcccaacct 24266074  T
Q  239 a 239  Q
    |    
T  24266073 a 24266073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 24261394 - 24261194
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaa-gagttacaagaatctagcttatcaagct 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24261394 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaaagagttacaagaatctagcttatcaagct 24261295  T
Q  139 ttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 238  Q
    ||||||| |||||||||||||| ||||||||||||| ||||||| |||||||||||||||||  ||||||||| ||||||||||||||||||||||||||    
T  24261294 ttacacaagacaaaaccctagacctaccctttggtaatttcccaacctcacactatgaacccataatcccaagatgattacaatgttgttttcccaacct 24261195  T
Q  239 a 239  Q
    |    
T  24261194 a 24261194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 16884943 - 16885143
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16884943 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgttttacaaagagttacaagaatctagcttatcaagctt 16885042  T
Q  140 tacacatgacaaaaccctagatctaccctttggt-attttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 238  Q
    |||||| |||||||||||||| |||||||||| | | ||||||| |||||||||||||||||  ||||||||| ||||||||||||||||||||||||||    
T  16885043 tacacaagacaaaaccctagacctaccctttgataaatttcccaacctcacactatgaacccataatcccaagatgattacaatgttgttttcccaacct 16885142  T
Q  239 a 239  Q
    |    
T  16885143 a 16885143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 16880087 - 16880287
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16880087 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgttttacaaagagttacaagaatctagcttatcaagctt 16880186  T
Q  140 tacacatgacaaaaccctagatctaccctttggt-attttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 238  Q
    |||||| |||||||||||||| |||||||||| | | ||||||| |||||||||||||||||  ||||||||| |||||||||||||||||| |||||||    
T  16880187 tacacaagacaaaaccctagacctaccctttgataaatttcccaacctcacactatgaacccataatcccaagatgattacaatgttgtttttccaacct 16880286  T
Q  239 a 239  Q
    |    
T  16880287 a 16880287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 19992327 - 19992525
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||| |||||||||||||||||    
T  19992327 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgtgaaagtgttacaaaaggttacaagactctagcttatcaagctt 19992426  T
Q  140 tacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaaccta 239  Q
    |||||||||  |||||||||| |||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||| ||| |||||||||    
T  19992427 tacacatgaacaaaccctagaactaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtt-tttccccaaccta 19992525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 21812309 - 21812111
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaa-gct 138  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||  ||| ||||| |||||||| |||| |||    
T  21812309 cagttcagccaatgtggcctaatctgggggagagagcagctttccaatccaatatgtgaa-gtcttacaaaaggttccaagactctagcttgtcaaagct 21812211  T
Q  139 ttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 238  Q
    ||||||||||  ||||||||||||||||||||||||||||||||  ||||||||||||||||  ||||||||||||||||||||||| ||| ||||||||    
T  21812210 ttacacatgaacaaaccctagatctaccctttggtattttcccactctcacactatgaacccataatcccaaggtgattacaatgtt-tttccccaacct 21812112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 40 - 225
Target Start/End: Complemental strand, 24024397 - 24024212
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||| |||||| | ||||||||    
T  24024397 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaatgttacaagactctagcct-tcaagctt 24024299  T
Q  140 tacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgtt 225  Q
    |||||||||  |||||||||| ||||||||||||||||||||||  ||||||| |||||||||||| |||| |||||||||||||||    
T  24024298 tacacatgaacaaaccctagattctaccctttggtattttcccactctcacacgatgaaccctaaaacccacggtgattacaatgtt 24024212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 40 - 237
Target Start/End: Complemental strand, 31109654 - 31109459
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||| |||||| | ||||||||    
T  31109654 cagttcagccaatatggcctaatctaggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagactctagcct-tcaagctt 31109556  T
Q  140 tacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacc 237  Q
    | |||||||  |||||||||| ||||||||||| ||||||||||  |||||||||||||||||||| |||||||||||||||||||  |||||||||||    
T  31109555 tgcacatgaacaaaccctagattctaccctttgatattttcccactctcacactatgaaccctaaaacccaaggtgattacaatgt--ttttcccaacc 31109459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 40 - 237
Target Start/End: Original strand, 12406345 - 12406541
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaa-tctagcttatcaagct 138  Q
    ||||||||||||| |||||||||||||||||||||  ||||||||||||||||||| ||| ||||||||||  |||||||||| |||||| | |||||||    
T  12406345 cagttcagccaatatggcctaatctgggggagagaatagctctccaatccaatatgagaaagtgttacaaaaggttacaagaactctagcct-tcaagct 12406443  T
Q  139 ttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacc 237  Q
    ||||||||||  |||||||||| ||||||||||||| ||| ||||  |||||| |||||||||||||  ||||||||||||||||||  |||||||||||    
T  12406444 ttacacatgaacaaaccctagattctaccctttggtgtttccccactctcacaatatgaaccctaaaagccaaggtgattacaatgt--ttttcccaacc 12406541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 40 - 237
Target Start/End: Original strand, 12396925 - 12397121
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaa-tctagcttatcaagct 138  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||  |||||||||| |||||| | | || ||    
T  12396925 cagttcagccaatatggcctaatctgggggagagaacagctctccaatccaatatgagaaagtgttacaaaaggttacaagaactctagcct-ttaatct 12397023  T
Q  139 ttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacc 237  Q
    ||||||||||  |||||||||| ||||||||||||| ||| ||||   ||||| ||||||||||||| |||||||||||||||||||  |||||||||||    
T  12397024 ttacacatgaacaaaccctagattctaccctttggtgtttccccactatcacaatatgaaccctaaaacccaaggtgattacaatgt--ttttcccaacc 12397121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 2057979 - 2058062
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||    
T  2057979 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgatgaaagtgttacaaagggttacaagaa 2058062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 204
Target Start/End: Complemental strand, 1533527 - 1533360
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaatc--tagcttatcaag 136  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| |||||||||| |  ||||||  ||||    
T  1533527 cagttcagccaatatggcctaatctgggggagagagcatctctccaatccaatatgatgaaagtgttacaaagggttacaagaaacaatagctt-gcaag 1533429  T
Q  137 ctttacacatgaca-aaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaa 204  Q
    | ||||||| || | ||  |||||| ||||||||||||| ||||||||  |||||| |||||||||||||    
T  1533428 c-ttacacaagaaacaagacctagattctaccctttggtgttttcccactctcacaatatgaaccctaaa 1533360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 20357630 - 20357548
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||    
T  20357630 cagttcagccaatatggcctaatttgggggagagagcagctctccaatccaatatgagaaagtgttacaaagggttacaagaa 20357548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 18408777 - 18408860
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||    
T  18408777 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccagtatgatgaaagtgttacaaagggttacaagaa 18408860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 4866744 - 4866814
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaa 110  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  4866744 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaa 4866814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 21639822 - 21639905
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatat-gtgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||  |||| ||||||||||| ||||||||||    
T  21639822 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccactataatgaaagtgttacaaagggttacaagaa 21639905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 18413654 - 18413736
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||    
T  18413654 cagttcagccaatatggcctaatctgggg-agagagcagctctccaatccactatgatgaaagtgttacaaagggttacaagaa 18413736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 21646020 - 21646103
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||| ||||||||||| ||| ||||||||||||||||||||| |||| |||| |||||| |||| ||||||||||    
T  21646020 cagttcagccaatatggcctaatctagggaagagagcagctctccaatccactatgatgaaagtgttaaaaagggttacaagaa 21646103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 44848750 - 44848684
Alignment:
Q  57 cctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| |||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  44848750 cctaacctgggggagagagcagctctccaatccactatgatgaaagtgttacaaagagttacaagaa 44848684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 21983306 - 21983383
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac--aaagagttacaagaa 122  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||| |||| |||||||  |||||||||||||||    
T  21983306 ccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaaaagagttacaagaa 21983383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 29159825 - 29159910
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagctta 131  Q
    ||||| || |||||||| ||||||||||||||||||||||||| |||| |||| ||||||| |||||||||||||||  |||||||    
T  29159825 ccaatatgacctaatctaggggagagagcagctctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagctta 29159910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 2580412 - 2580487
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| || |||| ||||||||||||||||||||||||||||| || | |||| ||||||||| ||||||||||||    
T  2580412 ccaatatgacctagtctgggggagagagcagctctccaatccactaagatgaaagtgttacaatgagttacaagaa 2580487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 9190083 - 9190008
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| || |||| ||||||||||||||||||||||||||||| || | |||| ||||||||| ||||||||||||    
T  9190083 ccaatatgacctagtctgggggagagagcagctctccaatccactaagatgaaagtgttacaatgagttacaagaa 9190008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 2647771 - 2647685
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagcttat 132  Q
    ||||| || |||| |||||||||||||||||| |||||||||| |||| |||| ||||||| |||||||||||||||  ||||||||    
T  2647771 ccaatatgacctattctgggggagagagcagccctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagcttat 2647685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 20284111 - 20284196
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaatctagcttat 132  Q
    ||||| || ||||||||||||||||||||||| |||||||||| || | |||| ||||||||| | ||||||||||  ||||||||    
T  20284111 ccaatatgacctaatctgggggagagagcagccctccaatccactaagatgaaagtgttacaatgcgttacaagaaattagcttat 20284196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 33332516 - 33332439
Alignment:
Q  57 cctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagcttat 132  Q
    ||||||||||||||||||||||| |||||||||| || | |||| ||||||| |||||||||||||||  ||||||||    
T  33332516 cctaatctgggggagagagcagccctccaatccactaagatgaaagtgttacaaaagagttacaagaaattagcttat 33332439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 46516385 - 46516300
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagctta 131  Q
    ||||| || |||||||| |||||||||||||| |||||||||| |||| |||| ||||||| |||||||||||||||  |||||||    
T  46516385 ccaatatgacctaatctaggggagagagcagccctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagctta 46516300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 49091683 - 49091759
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaa 122  Q
    ||||| || |||||||||||| |||||||| |||||||||||| |||| |||| ||||||| |||||||||||||||    
T  49091683 ccaatatgacctaatctggggaagagagcaactctccaatccactatgatgaaagtgttacaaaagagttacaagaa 49091759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 55970 - 56055
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagcttat 132  Q
    ||||| || |||||||||||| |||||||||| |||||||||| |||| |||| ||||||| |||||||||||||||  ||||||||    
T  55970 ccaatatgacctaatctgggg-agagagcagccctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagcttat 56055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 35960847 - 35960924
Alignment:
Q  57 cctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaa-gagttacaagaatctagcttat 132  Q
    ||||||||||||||||||||||| |||||| ||| |||| |||| |||||||||| |||||| |||||  ||||||||    
T  35960847 cctaatctgggggagagagcagccctccaaaccactatgatgaaagtgttacaaatgagttagaagaaattagcttat 35960924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 2479368 - 2479433
Alignment:
Q  57 cctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    |||||||| |||| ||||||||||||| |||||| |||| |||| |||||||||||||||| |||||    
T  2479368 cctaatctagggg-gagagcagctctcaaatccactatgatgaaagtgttacaaagagttataagaa 2479433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 28617300 - 28617258
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatcca 90  Q
    ||||| || |||| |||||||||||||||||||||||||||||    
T  28617300 ccaatatgacctactctgggggagagagcagctctccaatcca 28617258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 4796733 - 4796656
Alignment:
Q  57 cctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagcttat 132  Q
    |||||||||||||||| |||||| ||| |||||| |||| ||||  |||||| |||||||||||||||  ||||||||    
T  4796733 cctaatctgggggagaaagcagccctcaaatccactatgatgaaattgttacaaaagagttacaagaaattagcttat 4796656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 23403079 - 23403003
Alignment:
Q  57 cctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaatctagcttat 132  Q
    ||||||||| ||||| ||||||| |||||||| | || | |||| ||||||||| ||||||||||||  ||||||||    
T  23403079 cctaatctgagggagtgagcagccctccaatctactaagatgaaagtgttacaatgagttacaagaaattagcttat 23403003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 168; Significance: 5e-90; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 31397064 - 31396862
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaa-gagttacaagaatctagcttatcaagct 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31397064 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaaagagttacaagaatctagcttatcaagct 31396965  T
Q  139 ttacacatgacaaaa--ccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaac 236  Q
    ||||||| |||||||  ||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  31396964 ttacacaagacaaaaaaccctagatctaccctttggcattttcccatcctcacactatgaacccataatcccaaggtgattacaatgttgttttcccaac 31396865  T
Q  237 cta 239  Q
    |||    
T  31396864 cta 31396862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 2785389 - 2785589
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaa-gagttacaagaatctagcttatcaagct 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  2785389 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaaagagttacaagaatctagcttttcaagct 2785488  T
Q  139 ttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 238  Q
    |||| |||||  |||||||||| ||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  2785489 ttactcatgaacaaaccctagacctaccctttggtattttcccaccctcacactatgaacccataatcccaaggtgattacaatgttgttttcccaacct 2785588  T
Q  239 a 239  Q
    |    
T  2785589 a 2785589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 33791330 - 33791530
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaa-gagttacaagaatctagcttatcaagct 138  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  33791330 cagttcagccaatgtggcctaatctgggggaaagagcagctctccaatccaatatgtgaatgtgttacaaaagagttacaagaatctagcttttcaagct 33791429  T
Q  139 ttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 238  Q
    ||||||||||  |||||||||| ||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  33791430 ttacacatgaacaaaccctagacctaccctttggtattttcccaccctcacactatgaacccataatcccaaggtgattacaatgttgttttcccaacct 33791529  T
Q  239 a 239  Q
    |    
T  33791530 a 33791530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 31401921 - 31401719
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaa-gagttacaagaatctagcttatcaagct 138  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31401921 cagttcagccaatgtggcctaatatgggggagagagcagctctccaatccaatatgtgaatgtgttacaaaagagttacaagaatctagcttatcaagct 31401822  T
Q  139 ttacacatgacaaaa--ccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaac 236  Q
    ||||||| |||||||  | ||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  31401821 ttacacaagacaaaaaactctagatctaccctttggcattttcccatcctcacactatgaacccataatcccaaggtgattacaatgttgttttcccaac 31401722  T
Q  237 cta 239  Q
    |||    
T  31401721 cta 31401719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 40 - 225
Target Start/End: Complemental strand, 37556693 - 37556508
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||| ||||||||||||||||||    
T  37556693 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaaagtgttacaaaaggttacaagtatctagcttatcaagctt 37556594  T
Q  140 tacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgtt 225  Q
    |||||||||  |||||||||| |||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||    
T  37556593 tacacatgaacaaaccctagaactaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtt 37556508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 40 - 225
Target Start/End: Complemental strand, 37561515 - 37561330
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||| ||||||||||||||||||    
T  37561515 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaaagtgttacaaaaggttacaagtatctagcttatcaagctt 37561416  T
Q  140 tacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgtt 225  Q
    |||||||||  |||||||||| |||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||    
T  37561415 tacacatgaacaaaccctagaactaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgtt 37561330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 28807643 - 28807448
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||| ||||||||    
T  28807643 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaa-gtgttacaaaaggttacaagaatctagctt-tcaagctt 28807546  T
Q  140 tacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaaccta 239  Q
    |||||||||  ||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||  |||||||||||||    
T  28807545 tacacatgaacaaaccctagatctaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgt--ttttcccaaccta 28807448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 33768193 - 33768398
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttac-aaagagttacaagaatctagcttatcaagct 138  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  33768193 cagttcagccaatgtggcctaatctgggggggagagcagctctccaatccaatatgtgaatgtgttacaaaagagttacaagaatctagcttttcaagct 33768292  T
Q  139 ttacacatgacaaaaccctagatctacccttt--ggtattttcccatcc---tcacactatgaaccctaaatcccaaggtgattacaatgttgttttccc 233  Q
    ||||||||||  |||||||||| |||||||||  | |||||||||  ||    |||||||||||||   |||||||||||||||||||||||||||||||    
T  33768293 ttacacatgaacaaaccctagacctaccctttcggttattttccctacccctccacactatgaaccaataatcccaaggtgattacaatgttgttttccc 33768392  T
Q  234 aaccta 239  Q
    ||||||    
T  33768393 aaccta 33768398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 40 - 225
Target Start/End: Original strand, 15044700 - 15044885
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||| |||||||| ||||||||    
T  15044700 cagttcagccaatatggcctaatatgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagactctagctt-tcaagctt 15044798  T
Q  140 tacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgtt 225  Q
    |||||||||  |||||||||| ||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||    
T  15044799 tacacatgaacaaaccctagattctaccctttggtattttcccactctcacactatgaaccctaaaacccaaggtgattacaatgtt 15044885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 40 - 237
Target Start/End: Complemental strand, 1457233 - 1457037
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaa-tctagcttatcaagct 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  |||||||||| |||||| | |||||||    
T  1457233 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagaactctagcct-tcaagct 1457135  T
Q  139 ttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacc 237  Q
    ||||||||||  |||||||||| ||||||||||||| ||| ||||  |||||| ||||||||||||| |||||||||||||||||||  |||||||||||    
T  1457134 ttacacatgaacaaaccctagattctaccctttggtgtttccccactctcacaatatgaaccctaaaacccaaggtgattacaatgt--ttttcccaacc 1457037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 40 - 237
Target Start/End: Original strand, 43592293 - 43592489
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaa-tctagcttatcaagct 138  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  |||||||||| |||||| | |||||||    
T  43592293 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagaactctagcct-tcaagct 43592391  T
Q  139 ttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacc 237  Q
    ||||||||||  |||||||||| ||||||||||||| ||| ||||  |||  | ||||||||||||| |||||||||||||||||||  |||||||||||    
T  43592392 ttacacatgaacaaaccctagattctaccctttggtgtttccccactctcttaatatgaaccctaaaacccaaggtgattacaatgt--ttttcccaacc 43592489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 40 - 237
Target Start/End: Original strand, 43598738 - 43598934
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaa-tctagcttatcaagct 138  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  |||||||||| |||||| | |||||||    
T  43598738 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagaactctagcct-tcaagct 43598836  T
Q  139 ttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacc 237  Q
    ||||||||||  |||||||||| ||||||||||||| ||| ||||  |||  | ||||||||||||| |||||||||||||||||||  |||||||||||    
T  43598837 ttacacatgaacaaaccctagattctaccctttggtgtttccccactctcttaatatgaaccctaaaacccaaggtgattacaatgt--ttttcccaacc 43598934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 40 - 237
Target Start/End: Original strand, 43604230 - 43604426
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaa-tctagcttatcaagct 138  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  |||||||||| |||||| | |||||||    
T  43604230 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagaactctagcct-tcaagct 43604328  T
Q  139 ttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacc 237  Q
    ||||||||||  |||||||||| ||||||||||||| ||| ||||  |||  | ||||||||||||| |||||||||||||||||||  |||||||||||    
T  43604329 ttacacatgaacaaaccctagattctaccctttggtgtttccccactctcttaatatgaaccctaaaacccaaggtgattacaatgt--ttttcccaacc 43604426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 40 - 237
Target Start/End: Original strand, 43609722 - 43609918
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaa-tctagcttatcaagct 138  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  |||||||||| |||||| | |||||||    
T  43609722 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagaactctagcct-tcaagct 43609820  T
Q  139 ttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacc 237  Q
    ||||||||||  |||||||||| ||||||||||||| ||| ||||  |||  | ||||||||||||| |||||||||||||||||||  |||||||||||    
T  43609821 ttacacatgaacaaaccctagattctaccctttggtgtttccccactctcttaatatgaaccctaaaacccaaggtgattacaatgt--ttttcccaacc 43609918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 40 - 237
Target Start/End: Original strand, 27449828 - 27450024
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaa-tctagcttatcaagct 138  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  |||||||||| |||||| | |||||||    
T  27449828 cagttcagccaatatagcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagaactctagcct-tcaagct 27449926  T
Q  139 ttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacc 237  Q
    ||||||||||  |||||||||| ||||||||||||| ||| ||||  |||  | ||||||||||||| |||||||||||||||||||  |||||||||||    
T  27449927 ttacacatgaacaaaccctagattctaccctttggtgtttccccactctcttaatatgaaccctaaaacccaaggtgattacaatgt--ttttcccaacc 27450024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 39 - 204
Target Start/End: Original strand, 30631419 - 30631586
Alignment:
Q  39 tcagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaa--tctagcttatcaag 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||  |||||| | |||||    
T  30631419 tcagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaagggttacaagaaactctagcct-tcaag 30631517  T
Q  137 ctttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaa 204  Q
    ||||||||||||  ||||| |||| ||||||||||||| ||| ||||  |||||| |||||||||||||    
T  30631518 ctttacacatgaacaaaccatagattctaccctttggtgtttccccactctcacaatatgaaccctaaa 30631586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 40 - 237
Target Start/End: Original strand, 27444984 - 27445180
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaa-tctagcttatcaagct 138  Q
    |||||||| |||| | |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  |||||||||| |||||| | |||||||    
T  27444984 cagttcaggcaatatagcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagaactctagcct-tcaagct 27445082  T
Q  139 ttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacc 237  Q
    ||||||||||  |||||||||| ||||||||||||| ||| ||||  |||  | ||||||||||||| |||||||||||||||||||  |||||||||||    
T  27445083 ttacacatgaacaaaccctagattctaccctttggtgtttccccactctcttaatatgaaccctaaaacccaaggtgattacaatgt--ttttcccaacc 27445180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 40 - 204
Target Start/End: Original strand, 31180228 - 31180393
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaa--tctagcttatcaagc 137  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||  |||||| | ||||||    
T  31180228 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaagggttacaagaaactctagcct-tcaagc 31180326  T
Q  138 tttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaa 204  Q
    |||||||| ||| |||||||||| ||||||||||||| ||| ||||  |||||| |||||||| ||||    
T  31180327 tttacacaagac-aaaccctagattctaccctttggtgtttccccactctcacaatatgaaccataaa 31180393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 38192187 - 38192270
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||    
T  38192187 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaagggttacaagaa 38192270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 38219412 - 38219495
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||    
T  38219412 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaagggttacaagaa 38219495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 35387679 - 35387759
Alignment:
Q  43 ttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| | |||| |||| ||||||||||| ||||||||||    
T  35387679 ttcagccaatatggcctaatctgggggagagagcagctctccaatctactatgatgaaagtgttacaaagggttacaagaa 35387759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 9353407 - 9353332
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  9353407 ccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaagagttacaagaa 9353332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 36932425 - 36932350
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  36932425 ccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaagagttacaagaa 36932350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 15464564 - 15464629
Alignment:
Q  58 ctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  15464564 ctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaagagttacaagaa 15464629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 24135862 - 24135945
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||| || || | |||| ||||||||||| ||||||||||    
T  24135862 cagttcagccaatatggcctaatctgggggagagagcagctatccaatgcactaagatgaaagtgttacaaagggttacaagaa 24135945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 12084241 - 12084175
Alignment:
Q  57 cctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    |||||| ||||| ||||||||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  12084241 cctaatatggggcagagagcagctctccaatccactatgatgaaagtgttacaaagagttacaagaa 12084175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 10281773 - 10281858
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagctta 131  Q
    ||||| || ||| |||||||||||||||||||||||||||||| |||| |||| ||||||| |||||||||||||||  |||||||    
T  10281773 ccaatatgacctgatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagctta 10281858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 28832281 - 28832366
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaatctagcttat 132  Q
    ||||| || ||||||||||||||||||||||| |||||||||| || | |||| ||||||||| ||||||||||||  ||||||||    
T  28832281 ccaatatgacctaatctgggggagagagcagccctccaatccactaagatgaaagtgttacaatgagttacaagaaattagcttat 28832366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 14520252 - 14520327
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| || |||||||| |||| |||||||||||| ||||||| |||| |||| ||||||||||||||||||||||    
T  14520252 ccaatatgacctaatctaggggggagagcagctcttcaatccactatgatgaaagtgttacaaagagttacaagaa 14520327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 3880321 - 3880397
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaa 122  Q
    ||||| || ||||||||| || ||||||||||||||||||||| |||| |||| ||||||| |||||||||||||||    
T  3880321 ccaatatgacctaatctgaggcagagagcagctctccaatccactatgatgaaagtgttacaaaagagttacaagaa 3880397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 11917047 - 11916971
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatat-gtgaatgtgttac-aaagagttacaagaa 122  Q
    ||||| || |||||| ||||||||||||||||||||||||||| |||  |||| ||||||| |||||||||||||||    
T  11917047 ccaatatgacctaatatgggggagagagcagctctccaatccactataatgaaagtgttacaaaagagttacaagaa 11916971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 42127476 - 42127400
Alignment:
Q  57 cctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaatctagcttat 132  Q
    ||||||||||||||||||||||| | |||||||| || | |||| ||||||||| ||||||||||||  ||||||||    
T  42127476 cctaatctgggggagagagcagccccccaatccactaagatgaaagtgttacaatgagttacaagaaattagcttat 42127400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 17004035 - 17003988
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg 95  Q
    ||||| || |||||||||||||||||||||||||| ||||||| ||||    
T  17004035 ccaatatgacctaatctgggggagagagcagctcttcaatccactatg 17003988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 4410283 - 4410241
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatcca 90  Q
    ||||| || |||| |||||||||||||||||||||||||||||    
T  4410283 ccaatctgacctagtctgggggagagagcagctctccaatcca 4410241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 19588778 - 19588844
Alignment:
Q  58 ctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaa 122  Q
    |||||||  ||||||||||||| |||||||||| |||| |||| ||||||| |||||||||||||||    
T  19588778 ctaatcttagggagagagcagccctccaatccactatgatgaaagtgttacaaaagagttacaagaa 19588844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 168; Significance: 5e-90; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 43988535 - 43988333
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaa-gagttacaagaatctagcttatcaagct 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43988535 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaaagagttacaagaatctagcttatcaagct 43988436  T
Q  139 ttacacatgacaaaa--ccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaac 236  Q
    ||||||| |||||||  ||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  43988435 ttacacaagacaaaaaaccctagatctaccctttggcattttcccatcctcacactatgaacccataatcccaaggtgattacaatgttgttttcccaac 43988336  T
Q  237 cta 239  Q
    |||    
T  43988335 cta 43988333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 25445160 - 25444963
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||| |||||||||||||||||    
T  25445160 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagactctagcttatcaagctt 25445061  T
Q  140 tacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaaccta 239  Q
    |||||||||  |||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  25445060 tacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaaccctaaatcccaaggtgattacaatgt--ttttcccaaccta 25444963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 39445514 - 39445710
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||| |||||||||||||||||    
T  39445514 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgtgaa-gtgttacaaaaggttacaagactctagcttatcaagctt 39445612  T
Q  140 tacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaaccta 239  Q
    |||||||||  |||||||||| |||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||  |||||||||||||    
T  39445613 tacacatgaacaaaccctagaactaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgt--ttttcccaaccta 39445710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 1055082 - 1054886
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||  ||||||||| |||||||||||||||||    
T  1055082 cagttcagccaatatggcctaatctgggggagagagcaactctccaatccaatatgtgaa-gtgttacaaaaggttacaagactctagcttatcaagctt 1054984  T
Q  140 tacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaaccta 239  Q
    |||||||||  |||||||||| |||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||  |||||||||||||    
T  1054983 tacacatgaacaaaccctagaactaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgt--ttttcccaaccta 1054886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 44023944 - 44023748
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||| |||||||| ||||||||    
T  44023944 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgtgaa-gtgttacaaaaggttacaagactctagcttgtcaagctt 44023846  T
Q  140 tacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaaccta 239  Q
    |||||||||  |||||||||| |||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||  |||||||||||||    
T  44023845 tacacatgaacaaaccctagaactaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgt--ttttcccaaccta 44023748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 44 - 237
Target Start/End: Original strand, 41390599 - 41390790
Alignment:
Q  44 tcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctttaca 143  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||| |||||| | ||||||||||||    
T  41390599 tcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagactctagcct-tcaagctttaca 41390697  T
Q  144 catgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacc 237  Q
    |||||  |||||||||| ||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||  |||||||||||    
T  41390698 catgaacaaaccctagattctaccctttggtattttcccactctcacactatgaaccctaaaacccaaggtgattacaatgt--ttttcccaacc 41390790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 44 - 237
Target Start/End: Original strand, 41398254 - 41398445
Alignment:
Q  44 tcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctttaca 143  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||| |||||| | ||||||||||||    
T  41398254 tcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagactctagcct-tcaagctttaca 41398352  T
Q  144 catgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacc 237  Q
    |||||  |||||||||| ||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||  |||||||||||    
T  41398353 catgaacaaaccctagattctaccctttggtattttcccactctcacactatgaaccctaaaacccaaggtgattacaatgt--ttttcccaacc 41398445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 125 - 239
Target Start/End: Complemental strand, 25439882 - 25439770
Alignment:
Q  125 tagcttatcaagctttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgt 224  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  25439882 tagcttatcaagctttacacatgaacaaaccctagagctaccctttggtattttcccactctcacactatgaaccctaaatcccaaggtgattacaatgt 25439783  T
Q  225 tgttttcccaaccta 239  Q
      |||||||||||||    
T  25439782 --ttttcccaaccta 25439770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 40 - 204
Target Start/End: Complemental strand, 24787447 - 24787281
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatc--tagcttatcaagc 137  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||| |||||||||| |  |||| | ||||||    
T  24787447 cagttcagccaatatggcctaatctgggggggagagcagctctccaatccaatatgagaaagtgttacaaagggttacaagaaacaatagcct-tcaagc 24787349  T
Q  138 tttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaa 204  Q
     ||||||| ||  ||| |||||| ||||||||||||| ||| || |  |||||| |||||||||||||    
T  24787348 attacacaagaacaaatcctagattctaccctttggtgtttcccaactctcacaatatgaaccctaaa 24787281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 24202852 - 24202769
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||    
T  24202852 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaagggttacaagaa 24202769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 26644972 - 26644897
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  26644972 ccaatatgacctaatctgggggagagagcagctctccaatccattatgatgaaagtgttacaaagagttacaagaa 26644897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 3281730 - 3281805
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| || ||||||||||||||||||||||||||||||||||  ||| |||| ||||||||||||||||||||||    
T  3281730 ccaatatgacctaatctgggggagagagcagctctccaatccacgatgatgaaagtgttacaaagagttacaagaa 3281805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 19358926 - 19358843
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    |||||||| |||| || |||||| ||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||    
T  19358926 cagttcagtcaatatgacctaatatgggggagagagcagctctccaatccactatgatgaaagtgttacaaagggttacaagaa 19358843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 19361515 - 19361432
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    |||||||| |||| || |||||| ||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||    
T  19361515 cagttcagtcaatatgacctaatatgggggagagagcagctctccaatccactatgatgaaagtgttacaaagggttacaagaa 19361432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 19380155 - 19380072
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    |||||||| |||| || |||||| ||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||    
T  19380155 cagttcagtcaatatgacctaatatgggggagagagcagctctccaatccactatgatgaaagtgttacaaagggttacaagaa 19380072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 21536635 - 21536569
Alignment:
Q  57 cctaatctgggggagagagcagctctccaatccaatat-gtgaatgtgttacaaagagttacaagaa 122  Q
    |||||||||||||||||||||||||||||||||| |||  |||| ||||||||||||||||||||||    
T  21536635 cctaatctgggggagagagcagctctccaatccactataatgaaagtgttacaaagagttacaagaa 21536569  T

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Target: chr1; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 27104438 - 27104362
Alignment:
Q  57 cctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagctta 131  Q
    |||||||||||||||||||||||||||||||||| |||| |||| ||||||| |||||||||||||||  |||||||    
T  27104438 cctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagctta 27104362  T

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Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 13604689 - 13604623
Alignment:
Q  57 cctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    |||||| ||||||||||||||||||||||||||| |||| ||||  |||||||||||||||||||||    
T  13604689 cctaatatgggggagagagcagctctccaatccactatgatgaaaatgttacaaagagttacaagaa 13604623  T

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Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 16124591 - 16124505
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagcttat 132  Q
    ||||| || ||||||||||||||||||||||| |||||||||| |||| |||| ||||||| |||||||||||||||  ||||||||    
T  16124591 ccaatatgacctaatctgggggagagagcagccctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagcttat 16124505  T

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Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 19072950 - 19073036
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagcttat 132  Q
    ||||| || |||||||||||||||||||||||||||||||||| || | |||| ||||||| |||||||||||||||  ||||||||    
T  19072950 ccaatatgacctaatctgggggagagagcagctctccaatccactaagatgaaagtgttacaaaagagttacaagaaattagcttat 19073036  T

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Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 19120840 - 19120926
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagcttat 132  Q
    ||||| || |||||||||||||||||||||||||||||||||| || | |||| ||||||| |||||||||||||||  ||||||||    
T  19120840 ccaatatgacctaatctgggggagagagcagctctccaatccactaagatgaaagtgttacaaaagagttacaagaaattagcttat 19120926  T

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Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 47704011 - 47703926
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagctta 131  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||| |||| ||||||| ||||| |||||||||  |||||||    
T  47704011 ccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaaagaattacaagaaattagctta 47703926  T

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Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 119
Target Start/End: Original strand, 37069792 - 37069864
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaa 119  Q
    ||||| || ||||||||||||||||||||| |||||| ||||| |||| |||| |||||||||||||||||||    
T  37069792 ccaatatgacctaatctgggggagagagcatctctccgatccactatgatgaaagtgttacaaagagttacaa 37069864  T

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Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 47098887 - 47098814
Alignment:
Q  60 aatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaatctagcttat 132  Q
    |||||||||||||||||||| |||||||||| || | |||| ||||||||| ||||||||||||  ||||||||    
T  47098887 aatctgggggagagagcagccctccaatccactaagatgaaagtgttacaatgagttacaagaaattagcttat 47098814  T

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Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 29651833 - 29651909
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaa 122  Q
    ||||| || ||||||||||||||||||||||| |||||||||| |||| |||| ||||||| ||||| |||||||||    
T  29651833 ccaatatgacctaatctgggggagagagcagcactccaatccactatgatgaaagtgttacaaaagaattacaagaa 29651909  T

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Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 32889461 - 32889536
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| || |||| ||||||||| ||||||||||||||||||| || | |||| ||||||||| ||||||||||||    
T  32889461 ccaatatgacctagtctgggggatagagcagctctccaatccactaagatgaaagtgttacaatgagttacaagaa 32889536  T

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Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 13598420 - 13598506
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagcttat 132  Q
    ||||| || ||||||||||||||||||||||| || ||||||| |||| |||| ||||||| |||||| ||||||||  ||||||||    
T  13598420 ccaatatgacctaatctgggggagagagcagcccttcaatccactatgatgaaagtgttacaaaagagatacaagaaattagcttat 13598506  T

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Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 9476283 - 9476368
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagctta 131  Q
    ||||| || |||||||| ||||||||||||||||||||||||| |||| |||| || |||| ||||||||| |||||  |||||||    
T  9476283 ccaatatgacctaatctaggggagagagcagctctccaatccactatgatgaaagtattacaaaagagttataagaaattagctta 9476368  T

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Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 775694 - 775757
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaa 110  Q
    ||||| || ||||||||||||||||||| |||||||||||||| || | |||| ||||||||||    
T  775694 ccaatatgacctaatctgggggagagagtagctctccaatccactaagatgaaagtgttacaaa 775757  T

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Target: scaffold0259 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 2322 - 2122
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaa-gagttacaagaatctagcttatcaagct 138  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2322 cagttcagccaatgtggcctaatctgggggagagagtagctctccaatccaatatgtgaatgtgttacaaaagagttacaagaatctagcttatcaagct 2223  T
Q  139 ttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 238  Q
    ||||||| ||||||||| |||||||||||||||||| ||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  2222 ttacacaagacaaaaccatagatctaccctttggtaatttcccaacctcacactatgaacccataatcccaaggtgattacaatgttgttttcccaacct 2123  T
Q  239 a 239  Q
    |    
T  2122 a 2122  T

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Target: scaffold0028 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 149027 - 148827
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaa-gagttacaagaatctagcttatcaagct 138  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  149027 cagttcagccaatgtggcctaatctgggggagagagtagctctccaatccaatatgtgaatgtgttacaaaagagttacaagaatctagcttatcaagct 148928  T
Q  139 ttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 238  Q
    ||||||| ||||||||| |||||||||||||||||| ||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  148927 ttacacaagacaaaaccatagatctaccctttggtaatttcccaacctcacactatgaacccataatcccaaggtgattacaatgttgttttcccaacct 148828  T
Q  239 a 239  Q
    |    
T  148827 a 148827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 19344435 - 19344636
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaa-gagttacaagaatctagcttatcaagct 138  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  19344435 cagttcagccaatgtggcctaatctaggggagagagcagctctccaatccaatatgtgaatgtgttacaaaagagttacaagaatctagcttttcaagct 19344534  T
Q  139 ttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttg-ttttcccaacc 237  Q
    ||||||||||  |||||||||| ||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||| |||||||||||    
T  19344535 ttacacatgaacaaaccctagacctaccctttggtattttcccaccctcacactatgaacccataatcccaaggtgattacaatgttgtttttcccaacc 19344634  T
Q  238 ta 239  Q
    ||    
T  19344635 ta 19344636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 19349293 - 19349494
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaa-gagttacaagaatctagcttatcaagct 138  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  19349293 cagttcagccaatgtggcctaatctaggggagagagcagctctccaatccaatatgtgaatgtgttacaaaagagttacaagaatctagcttttcaagct 19349392  T
Q  139 ttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttg-ttttcccaacc 237  Q
    ||||||||||  |||||||||| ||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||| |||||||||||    
T  19349393 ttacacatgaacaaaccctagacctaccctttggtattttcccaccctcacactatgaacccataatcccaaggtgattacaatgttgtttttcccaacc 19349492  T
Q  238 ta 239  Q
    ||    
T  19349493 ta 19349494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 42 - 239
Target Start/End: Original strand, 32246804 - 32246999
Alignment:
Q  42 gttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagcttta 141  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||| |||||||| ||||||||||    
T  32246804 gttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagactctagctt-tcaagcttta 32246902  T
Q  142 cacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaaccta 239  Q
    |||||||  |||||||||| | ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  32246903 cacatgaacaaaccctagattataccctttggtattttcccactctcacactatgaaccctaaatcccaaggtgattacaatgt--ttttcccaaccta 32246999  T

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Target: chr2; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 40 - 225
Target Start/End: Complemental strand, 39812059 - 39811874
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||| |||||| | ||||||||    
T  39812059 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagactctagcct-tcaagctt 39811961  T
Q  140 tacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgtt 225  Q
    |||||||||  |||||||||| ||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||    
T  39811960 tacacatgaacaaaccctagattctaccctttggtattttcccactctcacactatgaaccctaaaacccaaggtgattacaatgtt 39811874  T

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Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 40 - 171
Target Start/End: Complemental strand, 44312695 - 44312563
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaa-tctagcttatcaagct 138  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  |||||||||| |||||| | |||||||    
T  44312695 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagaactctagcct-tcaagct 44312597  T
Q  139 ttacacatgacaaaaccctaga-tctaccctttg 171  Q
    ||||||||||  |||||||||| |||||||||||    
T  44312596 ttacacatgaacaaaccctagattctaccctttg 44312563  T

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Target: chr2; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 40 - 204
Target Start/End: Complemental strand, 11099010 - 11098844
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaatc--tagcttatcaag 136  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||| |  ||||||  ||||    
T  11099010 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgatgaaagtgttacaaagggttacaagaaacaatagctt-gcaag 11098912  T
Q  137 ctttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaa 204  Q
    | ||||||| ||  |||||||||| ||||||||||||| ||| ||||  |||||| |||||||||||||    
T  11098911 c-ttacacaagaacaaaccctagattctaccctttggtgtttccccactctcacaatatgaaccctaaa 11098844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 14291502 - 14291585
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||    
T  14291502 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgatgaaagtgttacaaagggttacaagaa 14291585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 3491764 - 3491847
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||    
T  3491764 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaagggttacaagaa 3491847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 9296484 - 9296401
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||    
T  9296484 cagttcagccaatatggcctaatttgggggagagagcagctctccaatccaatatgatgaaagtgttacaaagggttacaagaa 9296401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 25403646 - 25403730
Alignment:
Q  39 tcagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||    
T  25403646 tcagttcagccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaagggttacaagaa 25403730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 25398509 - 25398592
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||    
T  25398509 cagttcagccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaagggttacaagaa 25398592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 28259252 - 28259177
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| || |||||| ||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  28259252 ccaatatgacctaatttgggggagagagcagctctccaatccactatgatgaaagtgttacaaagagttacaagaa 28259177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 13569350 - 13569436
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagcttat 132  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||| |||| ||||||| |||||||||||||||  ||||||||    
T  13569350 ccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagcttat 13569436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 25407653 - 25407719
Alignment:
Q  57 cctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    |||||||||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||    
T  25407653 cctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaagggttacaagaa 25407719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 8040073 - 8040169
Alignment:
Q  40 cagttcag-ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaa---agagttacaagaatctagctta 131  Q
    |||||||| ||||| || |||||||||||||||||||||||||||||||||| |||| |||| |||||||||   |||||||||||||  |||||||    
T  8040073 cagttcagtccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaaagagagttacaagaaattagctta 8040169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 10445519 - 10445434
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaata-tgtgaatgtgttac-aaagagttacaagaatctagctta 131  Q
    ||||| || |||||||||||||||||||||||||||||||||| || | |||| ||||||| |||||||||||||||  |||||||    
T  10445519 ccaatatgacctaatctgggggagagagcagctctccaatccactattatgaaagtgttacaaaagagttacaagaaattagctta 10445434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 34388880 - 34388965
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagctta 131  Q
    ||||| || ||||||||||||||||||| |||||||||||||| |||| |||| ||||||| |||||||||||||||  |||||||    
T  34388880 ccaatatgacctaatctgggggagagagtagctctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagctta 34388965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 42039744 - 42039669
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| || ||||||||| ||||||||||||||||| |||||| |||| |||| ||||||| ||||||||||||||    
T  42039744 ccaatatgacctaatctgtgggagagagcagctctctaatccactatgatgaaagtgttacgaagagttacaagaa 42039669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 34682398 - 34682324
Alignment:
Q  59 taatctgggggagagagcagctctccaatccaatat-gtgaatgtgttac-aaagagttacaagaatctagctta 131  Q
    |||||||||||||||||||||||||||||||| |||  |||| ||||||| |||||||||||||||  |||||||    
T  34682398 taatctgggggagagagcagctctccaatccactataatgaaagtgttacaaaagagttacaagaaattagctta 34682324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 40738857 - 40738926
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaa 109  Q
    ||||||||||||| || ||||||||||||| |||||||||||||||||||| |||| |||| |||||||||    
T  40738857 cagttcagccaatatgacctaatctggggg-gagagcagctctccaatccactatgatgaaagtgttacaa 40738926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 17865234 - 17865311
Alignment:
Q  57 cctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagcttat 132  Q
    ||||||||||||||||||||| | |||||||||| |||| |||| ||||||| |||||||||||||||  ||||||||    
T  17865234 cctaatctgggggagagagcaaccctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagcttat 17865311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 21629957 - 21630041
Alignment:
Q  40 cagttcag-ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaa 122  Q
    |||||||| ||||| || |||||||||||| ||||||||||||||||||||| |||| |||| ||||||| |||||||||||||||    
T  21629957 cagttcagtccaatatgacctaatctgggg-agagagcagctctccaatccactatgatgaaagtgttacaaaagagttacaagaa 21630041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 8390216 - 8390140
Alignment:
Q  57 cctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgtt-acaaagagttacaagaatctagctta 131  Q
    |||||| ||||||||||||||||||||||||||| |||| |||| ||||| | |||||||||||||||  |||||||    
T  8390216 cctaatttgggggagagagcagctctccaatccactatgatgaaagtgttaaaaaagagttacaagaaattagctta 8390140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 23078545 - 23078470
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| || |||||| ||||||||||| || |||||||||||| |||| |||| |||||| |||||||||||||||    
T  23078545 ccaatatgacctaatatgggggagagaacaactctccaatccactatgatgaaagtgttagaaagagttacaagaa 23078470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 14699082 - 14698997
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagcttat 132  Q
    ||||| || ||||||||||||||||||||||| |||||||||| |||| |||| | ||||| |||||||||||||||  ||||||||    
T  14699082 ccaatatgacctaatctgggggagagagcagccctccaatccactatgatgaaag-gttacaaaagagttacaagaaattagcttat 14698997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 10707327 - 10707242
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagctta 131  Q
    ||||| || |||||| ||||||||||| || |||||||||||| |||| |||| ||||||| |||||||||||||||  |||||||    
T  10707327 ccaatatgacctaatatgggggagagaacaactctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagctta 10707242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 31056075 - 31056152
Alignment:
Q  57 cctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagcttat 132  Q
    |||||||| ||||||||||||||||||||||||| || | |||| ||||||| |||||||||||| ||  ||||||||    
T  31056075 cctaatctaggggagagagcagctctccaatccactaagatgaaagtgttacaaaagagttacaataaattagcttat 31056152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 20522242 - 20522318
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaa 122  Q
    ||||| || ||||||||||||||||||||| | |||||||||| |||| |||| ||||||| |||| ||||||||||    
T  20522242 ccaatatgacctaatctgggggagagagcaaccctccaatccactatgatgaaagtgttacaaaagggttacaagaa 20522318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 36757837 - 36757762
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| || ||||||||||||| || | ||||||||||||||| |||| |||| ||||| |||||||||| |||||    
T  36757837 ccaatatgacctaatctgggggggataacagctctccaatccagtatgatgaaagtgtttcaaagagttataagaa 36757762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 33118158 - 33118244
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagcttat 132  Q
    ||||| || |||||| |||||||||||||||| |||||||||| |||| |||| | ||||| ||| |||||||||||  ||||||||    
T  33118158 ccaatatgacctaatttgggggagagagcagccctccaatccactatgatgaaagagttacaaaatagttacaagaaattagcttat 33118244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 39482953 - 39483039
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagcttat 132  Q
    ||||| || |||||| |||||||||||||||  |||||||||| |||| ||||  |||||| |||||||||||||||  ||||||||    
T  39482953 ccaatatgacctaatatgggggagagagcaggcctccaatccactatgatgaaaatgttacaaaagagttacaagaaattagcttat 39483039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 377 - 573
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||| |||||||||||||||||    
T  377 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgtgaa-gtgttacaaaaggttacaagactctagcttatcaagctt 475  T
Q  140 tacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaaccta 239  Q
    |||||||||  |||||||||| |||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||  |||||||||||||    
T  476 tacacatgaacaaaccctagaactaccctttggtattttcccactctcacactatgaacccaaaatcccaaggtgattacaatgt--ttttcccaaccta 573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 141; Significance: 6e-74; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 3814038 - 3814234
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||| |||||||| ||||||||    
T  3814038 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgtgaaagtgttacaaaaggttacaagactctagctt-tcaagctt 3814136  T
Q  140 tacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaaccta 239  Q
    |||||||||  ||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||  |||||||||||||    
T  3814137 tacacatgaacaaaccctagatctaccctttggtattttcccactctcacactatgaaccctaaaacccaaggtgattacaatgt--ttttcccaaccta 3814234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 18855741 - 18855937
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||| |||||||||||||||||    
T  18855741 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgtgaa-gtgttacaaaaggttacaagactctagcttatcaagctt 18855839  T
Q  140 tacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaaccta 239  Q
    |||||||||  |||||||||| |||||||||||||||||||||  ||||||||||||||||  ||||||||||||||||||||||  |||||||||||||    
T  18855840 tacacatgaacaaaccctagaactaccctttggtattttcccactctcacactatgaacccacaatcccaaggtgattacaatgt--ttttcccaaccta 18855937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 5732679 - 5732875
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||| |||||||| ||||||||    
T  5732679 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagactctagctt-tcaagctt 5732777  T
Q  140 tacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaaccta 239  Q
    |||||||||  ||||||||||||||||||||||||||||||||  |||||||||| |||||| ||||||||||||||||||||||  |||||||||||||    
T  5732778 tacacatgaacaaaccctagatctaccctttggtattttcccactctcacactataaacccttaatcccaaggtgattacaatgt--ttttcccaaccta 5732875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 45357367 - 45357170
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||| |||||||| ||||||||    
T  45357367 cagttcagccaatatggcataatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagactctagctt-tcaagctt 45357269  T
Q  140 tacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacct 238  Q
    |||||||||  |||||||||| ||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||  ||||||||||||    
T  45357268 tacacatgaacaaaccctagattctaccctttggtattttcccactctcacactatgaaccctaaaccccaaggtgattacaatgt--ttttcccaacct 45357171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 45347888 - 45347690
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaaga-atctagcttatcaagct 138  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||  |||||||||  |||||| | |||||||    
T  45347888 cagttcagccaatatggcttaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagacctctagcct-tcaagct 45347790  T
Q  139 ttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacc 237  Q
    ||||||||||  |||||||||| ||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||  |||||||||||    
T  45347789 ttacacatgaacaaaccctagattctaccctttggtattttcccactctcacactatgaaccctaaaccccaaggtgattacaatgt--ttttcccaacc 45347692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 40 - 225
Target Start/End: Complemental strand, 9224478 - 9224292
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaa-tctagcttatcaagct 138  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  |||| ||||| |||||| | |||||||    
T  9224478 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttagaagaactctagcct-tcaagct 9224380  T
Q  139 ttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgtt 225  Q
    ||||||||||  |||||||||| ||||||||||||| ||| ||||  |||||||||||||||||||| ||||||||||||||||||||    
T  9224379 ttacacatgaacaaaccctagactctaccctttggtgtttccccactctcacactatgaaccctaaaacccaaggtgattacaatgtt 9224292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 40 - 225
Target Start/End: Complemental strand, 9229265 - 9229079
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaa-tctagcttatcaagct 138  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  |||| ||||| |||||| | |||||||    
T  9229265 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttagaagaactctagcct-tcaagct 9229167  T
Q  139 ttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgtt 225  Q
    ||||||||||  |||||||||| ||||||||||||| ||| ||||  |||||||||||||||||||| ||||||||||||||||||||    
T  9229166 ttacacatgaacaaaccctagactctaccctttggtgtttccccactctcacactatgaaccctaaaacccaaggtgattacaatgtt 9229079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 40 - 237
Target Start/End: Original strand, 51520471 - 51520667
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaa-tctagcttatcaagct 138  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  |||||||||| |||||| | |||||||    
T  51520471 cagttctgccaatatggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagaactctagcct-tcaagct 51520569  T
Q  139 ttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaacc 237  Q
    ||||||||||  |||||||||| ||||||||||||| ||| ||||  |||  | ||||||||||||| |||||||||||||||||||  |||||||||||    
T  51520570 ttacacatgaacaaaccctagattctaccctttggtgtttccccactctcttaatatgaaccctaaaacccaaggtgattacaatgt--ttttcccaacc 51520667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 40 - 204
Target Start/End: Original strand, 24741954 - 24742120
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaatc--tagcttatcaag 136  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||| |  |||| | |||||    
T  24741954 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgatgaaagtgttacaaagggttacaagaaacaatagcct-tcaag 24742052  T
Q  137 ctttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaa 204  Q
    | ||||||| ||  |||||||||| ||||||||||||| ||| ||||  |||||| |||||||||||||    
T  24742053 c-ttacacaagaacaaaccctagattctaccctttggtgtttccccactctcacaatatgaaccctaaa 24742120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 56146782 - 56146664
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaa-tctagcttatcaagct 138  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  |||||||||| |||||| | |||||||    
T  56146782 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagaactctagcct-tcaagct 56146684  T
Q  139 ttacacatgacaaaacccta 158  Q
    ||||||||||  ||||||||    
T  56146683 ttacacatgaacaaacccta 56146664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 29760655 - 29760738
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||    
T  29760655 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgatgaaagtgttacaaagggttacaagaa 29760738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 36315304 - 36315220
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaatctagctta 131  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||  |||||||    
T  36315304 ccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaagagttacaagaaattagctta 36315220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 36329513 - 36329429
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaatctagctta 131  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||  |||||||    
T  36329513 ccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaagagttacaagaaattagctta 36329429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 5396746 - 5396671
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| || |||||||||| ||||||||||||||||||||||| |||| |||| ||||| ||||||||||||||||    
T  5396746 ccaatatgacctaatctggaggagagagcagctctccaatccactatgatgaaagtgttgcaaagagttacaagaa 5396671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 10047401 - 10047487
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagcttat 132  Q
    ||||| || ||||||||||||||||||||||| |||||||||| |||| |||| ||||||| |||||||||||||||  ||||||||    
T  10047401 ccaatatgacctaatctgggggagagagcagccctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagcttat 10047487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 28468612 - 28468542
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaa 109  Q
    ||||||||||||| || |||||||||| ||||||||||||||||||||||| |||| |||| |||||||||    
T  28468612 cagttcagccaatatgacctaatctggaggagagagcagctctccaatccactatgatgaaagtgttacaa 28468542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 39246016 - 39246092
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaa 122  Q
    ||||| || ||||||||||||||||||||||| |||||||||| |||| |||| ||||||| |||||||||||||||    
T  39246016 ccaatatgacctaatctgggggagagagcagccctccaatccactatgatgaaagtgttacaaaagagttacaagaa 39246092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 16623359 - 16623292
Alignment:
Q  57 cctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaa 122  Q
    |||||||||| ||||||||||||||||||||||| |||| |||| ||||||| |||||||||||||||    
T  16623359 cctaatctggaggagagagcagctctccaatccactatgatgaaagtgttacaaaagagttacaagaa 16623292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 31985708 - 31985634
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| || |||||||||||| ||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||    
T  31985708 ccaatatgacctaatctgggg-agagagcagctctccaatccactatgatgaaagtgttacaaagggttacaagaa 31985634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 38152503 - 38152428
Alignment:
Q  59 taatctgggggagagagcagctctccaatccaatat-gtgaatgtgttac-aaagagttacaagaatctagcttat 132  Q
    |||||||||||||||||||||||||||||||| ||| ||||| ||||||| ||||||||| |||||  ||||||||    
T  38152503 taatctgggggagagagcagctctccaatccactatggtgaaagtgttacaaaagagttataagaaattagcttat 38152428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 3777580 - 3777646
Alignment:
Q  57 cctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    |||||||| | |||||||| |||||||||||||| |||| |||| ||||||||||||||||||||||    
T  3777580 cctaatctagaggagagagtagctctccaatccactatgatgaaagtgttacaaagagttacaagaa 3777646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 5143281 - 5143344
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaa 110  Q
    ||||| || |||||||||||||||||||||||||||||| ||| |||| |||| ||||||||||    
T  5143281 ccaatatgacctaatctgggggagagagcagctctccaacccactatgatgaaagtgttacaaa 5143344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 16630744 - 16630669
Alignment:
Q  59 taatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagcttat 132  Q
    |||||||| ||||||| ||||||||||||||| |||| |||| ||||||| |||||||||||||||  ||||||||    
T  16630744 taatctggaggagagaacagctctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagcttat 16630669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 24333831 - 24333894
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaa 110  Q
    ||||| || |||||| ||||||||||||||||||||||||||| |||| |||| ||||||||||    
T  24333831 ccaatatgacctaatttgggggagagagcagctctccaatccactatgatgaacgtgttacaaa 24333894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 5269266 - 5269204
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaa 109  Q
    ||||| || ||||||||||||||||||||||| |||||||||| |||| |||| |||||||||    
T  5269266 ccaatatgacctaatctgggggagagagcagccctccaatccactatgatgaaagtgttacaa 5269204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 3796594 - 3796509
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagctta 131  Q
    ||||| || |||||| |||||||||||||| ||||| |||||| |||| |||| ||||||| |||||||||||||||  |||||||    
T  3796594 ccaatatgacctaatatgggggagagagcaactctctaatccactatgatgaaagtgttacaaaagagttacaagaaattagctta 3796509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 5147699 - 5147775
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaa 122  Q
    ||||| || |||||| |||||||| ||||||||||||| |||| |||| |||| ||||||| ||| |||||||||||    
T  5147699 ccaatatgacctaatttgggggagggagcagctctccagtccattatgatgaaagtgttacaaaatagttacaagaa 5147775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 9713 - 9517
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaatctagcttatcaagctt 139  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||| |||||| | ||||||||    
T  9713 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttacaagactctagcct-tcaagctt 9615  T
Q  140 tacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaaccta 239  Q
    |||||||||  ||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||  |||||||||||||    
T  9614 tacacatgaacaaaccctagatctaccctttggtattttcccactctcacactatgaaccctaaaacccaaggtgattacaatgt--ttttcccaaccta 9517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 113 - 225
Target Start/End: Complemental strand, 3845 - 3734
Alignment:
Q  113 gttacaagaatctagcttatcaagctttacacatgacaaaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaagg 212  Q
    ||||||||| |||||| | |||||||||||||||||  ||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||    
T  3845 gttacaagactctagcct-tcaagctttacacatgaacaaaccctagatctaccctttggtattttcccactctcacactatgaaccctaaaacccaagg 3747  T
Q  213 tgattacaatgtt 225  Q
    |||||||||||||    
T  3746 tgattacaatgtt 3734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 40 - 225
Target Start/End: Complemental strand, 35133 - 34947
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgtgttacaaagagttacaagaa-tctagcttatcaagct 138  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  |||| ||||| |||||| | |||||||    
T  35133 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccaatatgagaaagtgttacaaaaggttagaagaactctagcct-tcaagct 35035  T
Q  139 ttacacatgacaaaaccctaga-tctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgtt 225  Q
    ||||||||||  |||||||||| ||||||||||||| ||| ||||  |||||||||||||||||||| ||||||||||||||||||||    
T  35034 ttacacatgaacaaaccctagactctaccctttggtgtttccccactctcacactatgaaccctaaaacccaaggtgattacaatgtt 34947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 176936 - 176848
Alignment:
Q  151 aaaccctagatctaccctttggtattttcccatcctcacactatgaaccctaaatcccaaggtgattacaatgttgttttcccaaccta 239  Q
    |||||||||| ||||||||||||| ||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  176936 aaaccctagacctaccctttggtaatttcccaacctcacactatgaacccataatcccaaggtgattacaatgttgttttcccaaccta 176848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 182035 - 181973
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgt 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  182035 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatgtgaatgt 181973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 18035 - 17952
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||    
T  18035 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaagggttacaagaa 17952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 24128 - 24045
Alignment:
Q  40 cagttcagccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||    
T  24128 cagttcagccaatatggcctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaagggttacaagaa 24045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 8494 - 8419
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  8494 ccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaagagttacaagaa 8419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 44022 - 43961
Alignment:
Q  62 tctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  44022 tctgggggagagagcagctctccaatccactatgatgaaagtgttacaaagagttacaagaa 43961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 36907 - 36832
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    ||||| || |||||||| ||| |||||||||||| |||| ||| |||| |||| ||||||||||||||||||||||    
T  36907 ccaatatgacctaatctagggaagagagcagctcgccaacccactatgatgaaagtgttacaaagagttacaagaa 36832  T

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Target: scaffold0036 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 85696 - 85789
Alignment:
Q  40 cagttcag-ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaatctagctta 131  Q
    |||||||| ||||| || |||||||||||||||||||| |||||||||||||  ||| |||| ||||||||||||||||||||||  |||||||    
T  85696 cagttcagtccaatatgacctaatctgggggagagagcggctctccaatccaccatgatgaaagtgttacaaagagttacaagaaattagctta 85789  T

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Target: scaffold0006 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 133346 - 133280
Alignment:
Q  57 cctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaagagttacaagaa 122  Q
    |||||| ||||||||||||||||||||||||||| |||| ||||  |||||||||||||||||||||    
T  133346 cctaatatgggggagagagcagctctccaatccactatgatgaaaatgttacaaagagttacaagaa 133280  T

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Target: scaffold0006; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 5705 - 5791
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaatctagcttat 132  Q
    ||||| || ||||||||||||||||||||||| || ||||||| |||| |||| ||||||| |||||| ||||||||  ||||||||    
T  5705 ccaatatgacctaatctgggggagagagcagcccttcaatccactatgatgaaagtgttacaaaagagatacaagaaattagcttat 5791  T

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Target: scaffold0006; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 2514 - 2577
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttacaaa 110  Q
    ||||| || |||||||||||||||| |||||| |||||||||| |||| |||| ||||||||||    
T  2514 ccaatatgacctaatctgggggagacagcagccctccaatccactatgatgaaagtgttacaaa 2577  T

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Target: scaffold0148 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 10751 - 10827
Alignment:
Q  48 ccaatgtggcctaatctgggggagagagcagctctccaatccaatatg-tgaatgtgttac-aaagagttacaagaa 122  Q
    ||||| || |||||| ||||||||||||||||||||||||||| || | |||| ||||||| |||||||||||||||    
T  10751 ccaatatgacctaatttgggggagagagcagctctccaatccactaagatgaaagtgttacaaaagagttacaagaa 10827  T

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Target: scaffold0098 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 45284 - 45322
Alignment:
Q  57 cctaatctgggggagagagcagctctccaatccaatatg 95  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  45284 cctaatctgggggagagagcagctctccaatccactatg 45322  T

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Target: scaffold0154 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 11500 - 11533
Alignment:
Q  57 cctaatctgggggagagagcagctctccaatcca 90  Q
    |||| |||||||||||||||||||||||||||||    
T  11500 cctagtctgggggagagagcagctctccaatcca 11533  T

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