View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0946_low_17 (Length: 292)
Name: NF0946_low_17
Description: NF0946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0946_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 33 - 221
Target Start/End: Complemental strand, 39934614 - 39934426
Alignment:
| Q |
33 |
tatcaacaatttccacaatcacttaagagcacatcaacagcaatgatttcaatgcttataggaattgctttttatttgagcactgctttaattgaccaag |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39934614 |
tatcaacaatttccacaatcacttaagagcacatcaactgcaatgatttcaatgcttataggaattgctttttacttgagcactgctttaattgaccaag |
39934515 |
T |
|
| Q |
133 |
ttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgtattggatgttggtcgtgtttggagctatc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
39934514 |
ttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgtattggatgttagtcgtgtttggagctatc |
39934426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 33 - 221
Target Start/End: Original strand, 39704408 - 39704596
Alignment:
| Q |
33 |
tatcaacaatttccacaatcacttaagagcacatcaacagcaatgatttcaatgcttataggaattgctttttatttgagcactgctttaattgaccaag |
132 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39704408 |
tatcaacaatttccacaatcacttaagatcacatcaactgcaatgatttcaatgcttataggtattgctttttatttgagcactgctttaattgaccaag |
39704507 |
T |
|
| Q |
133 |
ttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgtattggatgttggtcgtgtttggagctatc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39704508 |
ttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgtattggatgttggtcatgtttggagctatc |
39704596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 30 - 221
Target Start/End: Original strand, 39695496 - 39695687
Alignment:
| Q |
30 |
tactatcaacaatttccacaatcacttaagagcacatcaacagcaatgatttcaatgcttataggaattgctttttatttgagcactgctttaattgacc |
129 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39695496 |
tactaccaacaatttccacaatcacttaagaacacatcaacagcaatgatttcaatgcttataggaattgctttttatttgagcactgctttaattgacc |
39695595 |
T |
|
| Q |
130 |
aagttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgtattggatgttggtcgtgtttggagctatc |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||| |
|
|
| T |
39695596 |
aagttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgtattggatgttagtagtgtttggaggtatc |
39695687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 33 - 202
Target Start/End: Complemental strand, 39928967 - 39928798
Alignment:
| Q |
33 |
tatcaacaatttccacaatcacttaagagcacatcaacagcaatgatttcaatgcttataggaattgctttttatttgagcactgctttaattgaccaag |
132 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||| |||| | |||||||||||||||| |||||||||| |||||| ||| |||||||| |||| |
|
|
| T |
39928967 |
tatcaacaatttccacaatcgctaaagagcacatcaactgcaacggtttcaatgcttataggggttgctttttacatgagcaatgcattaattgatcaag |
39928868 |
T |
|
| Q |
133 |
ttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgtattggatgtt |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||| |||| |||||||| |||||||| |
|
|
| T |
39928867 |
ttcgtaggagtactgattggttacctgatgacataaatcatgggaagattgacaatgtgtactggatgtt |
39928798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 175
Target Start/End: Complemental strand, 38059126 - 38059050
Alignment:
| Q |
99 |
gctttttatttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctgatgaaataaatcatgg |
175 |
Q |
| |
|
|||||| | ||||||||| ||||| |||||||| | | ||||| |||| |||||||||| ||||| ||||||||||| |
|
|
| T |
38059126 |
gcttttaacttgagcactactttagttgaccaaatccataggattactaattggttaccagatgacataaatcatgg |
38059050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 38061644 - 38061607
Alignment:
| Q |
33 |
tatcaacaatttccacaatcacttaagagcacatcaac |
70 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
38061644 |
tatcaacaatttccacagtcactgaagagcacatcaac |
38061607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 4847157 - 4847209
Alignment:
| Q |
37 |
aacaatttccacaatcacttaagagcacatcaacagcaatgatttcaatgctt |
89 |
Q |
| |
|
||||||||||||||| | || |||||||||||| ||||||||||||||||| |
|
|
| T |
4847157 |
aacaatttccacaataatttttgagcacatcaactccaatgatttcaatgctt |
4847209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University