View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0946_low_2 (Length: 449)
Name: NF0946_low_2
Description: NF0946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0946_low_2 |
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| [»] chr2 (4 HSPs) |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 83 - 449
Target Start/End: Original strand, 38251622 - 38251989
Alignment:
| Q |
83 |
tgttgcagctggaacacaatgatactaatcagaacctaggggtggaagaaatgccacaacgtagctgcagcaccacaacagtccacaggcggaaaaccag |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38251622 |
tgttgcagctggaacacaatgatactaatcagaacctaggggtggaagaaatgccacaacgtagctgcagcaccacaacagtccacaggcggaaaaccag |
38251721 |
T |
|
| Q |
183 |
ctttgaactacgtagagaattacctcaaacttgatccgagatatacagaaaattaccttgaaccagcattgaagtatgcatagaacaccc-nnnnnnnca |
281 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38251722 |
ctttgaactacgtagagaattacctcaaacttgatccgagatatacagaaaattaccttgaaccagcattgaagtatgcatagaacacccaaaaaaaaca |
38251821 |
T |
|
| Q |
282 |
ccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatcaa |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38251822 |
ccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatcaa |
38251921 |
T |
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| Q |
382 |
gatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctactataac |
449 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38251922 |
gatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctgctataac |
38251989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 83 - 449
Target Start/End: Complemental strand, 43157920 - 43157553
Alignment:
| Q |
83 |
tgttgcagctggaacacaatgatactaatcagaacctaggggtggaagaaatgccacaacgtagctgcagcaccacaacagtccacaggcggaaaaccag |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43157920 |
tgttgcagctggaacacaatgatactaatcagaacctaggggtggaagaaatgccacaacgtagctgcagcaccacaacagtccacaggcggaaaaccag |
43157821 |
T |
|
| Q |
183 |
ctttgaactacgtagagaattacctcaaacttgatccgagatatacagaaaattaccttgaaccagcattgaagtatgcatagaacaccc-nnnnnnnca |
281 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43157820 |
ctttgaactacgtagagaattacctcaaacttgatctgagatatacagaaaattaccttgaaccagcattgaagtatgcatagaacacccaaaaaaaaca |
43157721 |
T |
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| Q |
282 |
ccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatcaa |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43157720 |
ccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatcaa |
43157621 |
T |
|
| Q |
382 |
gatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctactataac |
449 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43157620 |
gatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctgctataac |
43157553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 380 - 449
Target Start/End: Original strand, 38251996 - 38252066
Alignment:
| Q |
380 |
aagatttgttacacactctaaaattatgctagca-aaatagaaacgaacaaatgacagaggctactataac |
449 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
38251996 |
aagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataac |
38252066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 380 - 449
Target Start/End: Complemental strand, 43157546 - 43157476
Alignment:
| Q |
380 |
aagatttgttacacactctaaaattatgctagca-aaatagaaacgaacaaatgacagaggctactataac |
449 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
43157546 |
aagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataac |
43157476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 83 - 449
Target Start/End: Complemental strand, 11475344 - 11474977
Alignment:
| Q |
83 |
tgttgcagctggaacacaatgatactaatcagaacctaggggtggaagaaatgccacaacgtagctgcagcaccacaacagtccacaggcggaaaaccag |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11475344 |
tgttgcagctggaacacaatgatactaatcagaacctaggggtggaagaaatgccacaacgtagctgcagcaccacaacagtccacaggcggaaaaccag |
11475245 |
T |
|
| Q |
183 |
ctttgaactacgtagagaattacctcaaacttgatccgagatatacagaaaattaccttgaaccagcattgaagtatgcatagaacaccc-nnnnnnnca |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
11475244 |
ctttgaactacgtagagaattacctcaaacttgatccgatatatacagaaaattaccttgaaccagcattgaagtatgcatagaacacccaaaaaaaaca |
11475145 |
T |
|
| Q |
282 |
ccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatcaa |
381 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11475144 |
ccagattcagtaaaagctcaaactcctataggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatcaa |
11475045 |
T |
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| Q |
382 |
gatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctactataac |
449 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11475044 |
gatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctgctataac |
11474977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 83 - 449
Target Start/End: Complemental strand, 11503384 - 11503017
Alignment:
| Q |
83 |
tgttgcagctggaacacaatgatactaatcagaacctaggggtggaagaaatgccacaacgtagctgcagcaccacaacagtccacaggcggaaaaccag |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11503384 |
tgttgcagctggaacacaatgatactaatcagaacctaggggtggaagaaatgccacaacgtagctgcagcaccacaacagtccacaggcggaaaaccag |
11503285 |
T |
|
| Q |
183 |
ctttgaactacgtagagaattacctcaaacttgatccgagatatacagaaaattaccttgaaccagcattgaagtatgcatagaacaccc-nnnnnnnca |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
11503284 |
ctttgaactacgtagagaattacctcaaacttgatctgatatatacagaaaattaccttgaaccagcattgaagtatgcatagaacacccaaaaaaaaca |
11503185 |
T |
|
| Q |
282 |
ccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatcaa |
381 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11503184 |
ccagattcagtaaaagctcaaactcctattggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatcaa |
11503085 |
T |
|
| Q |
382 |
gatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctactataac |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
11503084 |
gatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctgctataac |
11503017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 380 - 449
Target Start/End: Complemental strand, 11474970 - 11474900
Alignment:
| Q |
380 |
aagatttgttacacactctaaaattatgctagca-aaatagaaacgaacaaatgacagaggctactataac |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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|
| T |
11474970 |
aagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataac |
11474900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 380 - 449
Target Start/End: Complemental strand, 11503010 - 11502940
Alignment:
| Q |
380 |
aagatttgttacacactctaaaattatgctagca-aaatagaaacgaacaaatgacagaggctactataac |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
11503010 |
aagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataac |
11502940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 18330745 - 18330801
Alignment:
| Q |
347 |
agagttaacacacaatccaaaaacaaaagaatcaagatttgttacacactctaaaat |
403 |
Q |
| |
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|||||||| ||||||| ||||||||||| ||||| ||||||| ||||| ||||||| |
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|
| T |
18330745 |
agagttaaaacacaataaaaaaacaaaagcatcaacatttgttgcacacactaaaat |
18330801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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