View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0946_low_21 (Length: 256)
Name: NF0946_low_21
Description: NF0946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0946_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 28 - 247
Target Start/End: Original strand, 11379588 - 11379807
Alignment:
| Q |
28 |
catttccaccagcattatttaatgcatataacacttcattctttattcctaaagctggttttccagttatcaatctcaacaaaacaattccaaatgaata |
127 |
Q |
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| T |
11379588 |
catttccaccagcattatttaatgcatataacacttcattctttattcctaaagctggttttccagttatcaatctcaacaaaacaattccaaatgaata |
11379687 |
T |
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| Q |
128 |
aacatctgactttgaagtaagttcgcctgtacccaagaattctggatccatgtatgcaaaagttccctttgcaaaactagtgatccaaaactgtgtagta |
227 |
Q |
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| T |
11379688 |
aacatctgactttgaagtaagttcgcctgtacccaagaattccggatccatgtatgcaaaagttccctttgcaaaactagtgatccaaaactgtgtagta |
11379787 |
T |
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| Q |
228 |
ctattgttactagaataatc |
247 |
Q |
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| T |
11379788 |
ctattgttactagaagaatc |
11379807 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 198
Target Start/End: Complemental strand, 29363028 - 29362944
Alignment:
| Q |
114 |
attccaaatgaataaacatctgactttgaagtaagttcgcctgtacccaagaattctggatccatgtatgcaaaagttccctttg |
198 |
Q |
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| T |
29363028 |
attccaaaagaataaacatctgatttcggagtgagttcaccggaagcaaggaattcaggatccatgtagacaaaagttccctttg |
29362944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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