View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0946_low_22 (Length: 254)
Name: NF0946_low_22
Description: NF0946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0946_low_22 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 85 - 254
Target Start/End: Original strand, 39583777 - 39583947
Alignment:
| Q |
85 |
atgaaccaagattatacaaaggatcgtctcaagtaaggtaagctactgctatctgtatctaacaaaggaactnnnnnnn-gtgaaatcccaccgttgaga |
183 |
Q |
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| T |
39583777 |
atgaaccaagattatacaaaggatcgtctcaagtaaggtaagctactgctatctgtatctaacaaaggaactaaaaaaaagtgaaatcccaccattgaga |
39583876 |
T |
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| Q |
184 |
gtaaagttgagggagactatgaccattctcagcaagctcatcggcaacagaatttctttctcttacatgtt |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39583877 |
gtaaagttgagggagactatgaccattctcagcaagctcatcggcaacagaatttccttctcttacatgtt |
39583947 |
T |
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