View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0946_low_24 (Length: 251)

Name: NF0946_low_24
Description: NF0946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0946_low_24
NF0946_low_24
[»] chr8 (1 HSPs)
chr8 (33-251)||(6995399-6995617)
[»] chr1 (3 HSPs)
chr1 (45-101)||(40895250-40895306)
chr1 (137-186)||(7653619-7653668)
chr1 (200-245)||(40895217-40895262)
[»] chr7 (2 HSPs)
chr7 (103-198)||(23933623-23933716)
chr7 (137-189)||(34532929-34532981)
[»] chr3 (2 HSPs)
chr3 (127-160)||(38331242-38331275)
chr3 (103-198)||(1642682-1642775)


Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 33 - 251
Target Start/End: Complemental strand, 6995617 - 6995399
Alignment:
Q  33 acctaatactgatgtctacaacatcaacataagtagtgtttgtcttgatatccaacttttaccggcatcctttttggtgtaaattgggtattctctccgc 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  6995617 acctaatactgatgtctacaacatcaacataagtagtgtttgtcttgatatccaacttttgctggcatcctttttggtgtaaattgggtattctctccgc 6995518  T
Q  133 gtgtaactgcggagactaatccctcaaatcttatgaaacttaaatggacggtaaactctccctaaacttttaccggcatctaaaaaggttgatcaataga 232  Q
    |||||||||||||||||||||||||| ||||| ||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6995517 gtgtaactgcggagactaatccctcagatcttgtgaaatttaaataggcggtaaactctccctaaacttttaccggcatctaaaaaggttgatcaataga 6995418  T
Q  233 ttttccgaaattttcaaat 251  Q
    |||||||||||||||||||    
T  6995417 ttttccgaaattttcaaat 6995399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 40895306 - 40895250
Alignment:
Q  45 tgtctacaacatcaacataagtagtgtttgtcttgatatccaacttttaccggcatc 101  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  40895306 tgtctacaacatcaacataagtagtgtttgtcttgatatccaatttttactggcatc 40895250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 7653619 - 7653668
Alignment:
Q  137 aactgcggagactaatccctcaaatcttatgaaacttaaatggacggtaa 186  Q
    ||||||||||||||||| ||||| | || |||||||||||||||| ||||    
T  7653619 aactgcggagactaatctctcaagtattttgaaacttaaatggaccgtaa 7653668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 40895262 - 40895217
Alignment:
Q  200 ttttaccggcatctaaaaaggttgatcaatagattttccgaaattt 245  Q
    |||||| ||||||| ||||||||| ||||| |||||||||||||||    
T  40895262 ttttactggcatctgaaaaggttgctcaatcgattttccgaaattt 40895217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 198
Target Start/End: Original strand, 23933623 - 23933716
Alignment:
Q  103 tttttggtgtaaattgggtattctctccgcgtgtaactgcggagactaatccctcaaatcttatgaaacttaaatggacggtaaactctccctaaa 198  Q
    ||||||||||||||||||||| ||||  | ||| || ||| |||||||||||||||| | || |  ||| ||||||| ||| ||||||||||||||    
T  23933623 tttttggtgtaaattgggtatcctct--gtgtgcaattgcagagactaatccctcaagtattgtcgaacctaaatgggcggcaaactctccctaaa 23933716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 34532929 - 34532981
Alignment:
Q  137 aactgcggagactaatccctcaaatcttatgaaacttaaatggacggtaaact 189  Q
    ||||||| ||||||||||||||| |||||||||||  |||||  |||||||||    
T  34532929 aactgcgtagactaatccctcaagtcttatgaaaccaaaatgagcggtaaact 34532981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 160
Target Start/End: Complemental strand, 38331275 - 38331242
Alignment:
Q  127 ctccgcgtgtaactgcggagactaatccctcaaa 160  Q
    ||||||||| ||||||||||||||||||||||||    
T  38331275 ctccgcgtgcaactgcggagactaatccctcaaa 38331242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 1642775 - 1642682
Alignment:
Q  103 tttttggtgtaaattgggtattctctccgcgtgtaactgcggagactaatccctcaaatcttatgaaacttaaatggacggtaaactctccctaaa 198  Q
    |||||||||||||| || ||| |||  |||| | ||||||||| ||||||||||||| | || ||  ||  |||||||||||| ||||||||||||    
T  1642775 tttttggtgtaaatcggatatcctc--cgcgcgcaactgcggaaactaatccctcaagtattgtgggacccaaatggacggtagactctccctaaa 1642682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University