View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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Alignment Overview
Query: NF0946_low_3 (Length: 416)
Name: NF0946_low_3
Description: NF0946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 83 - 405
Target Start/End: Complemental strand, 9948217 - 9947891
Alignment:
| Q | 83 | gcaactcctcttgcattaggagctagttatgttgatactactagagcacttgaccccggtcttctttatgacgttggtgcacaagattatgttaatcttc | 182 | Q |
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| T | 9948217 | gcaactcctcttgcattaggagctagttatgttgatactactagagcgcttgaccccggtcttctttatgacgttggtgcacaagattatgttaatcttc | 9948118 | T |
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| Q | 183 | tctatggacttaacttcacacagaaacatatcactagcattacaagatccacattca----ttgctctaaaccttcattggatattaaccacccttcttt | 278 | Q |
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| T | 9948117 | tctatggacttaacttcacacagaaacatatcactaccattacaagatccacattcaatgattgctctaaaccttcattggatattaaccaccctttttt | 9948018 | T |
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| Q | 279 | tattgctttcttcaatggtggaaattcttcttggaggagaatacaagagttccacaaaacagtgaccaatgttgatgaggcataaacagtttatgttgcc | 378 | Q |
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| T | 9948017 | tattgctttcttcaatggtggaaattcttcttggaggagaatacaagagttccacaaaacagtgaccaatgttggtgaggcataaacagtttatgttgcc | 9947918 | T |
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| Q | 379 | aacattactcctatcaaagggtttcat | 405 | Q |
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| T | 9947917 | aacattactcctatcaaagggtttcat | 9947891 | T |
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Target: chr8; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 83 - 358
Target Start/End: Complemental strand, 8945746 - 8945467
Alignment:
| Q | 83 | gcaactcctcttgcattaggagctagttatgttgatactactagagcacttgaccccggtcttctttatgacgttggtgcacaagattatgttaatcttc | 182 | Q |
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| T | 8945746 | gcaactcctcttgcattgggagctggttatgttgatcccaatagagcacttgaccctggtcttgtttatgatgttggtgtacaagattatgttaatcttc | 8945647 | T |
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| Q | 183 | tctatggacttaacttcacacagaaacatatcactagcattacaagatccacattc----attgctctaaaccttcattggatattaaccacccttcttt | 278 | Q |
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| T | 8945646 | tttgtgcacttaacttcacacaaaaaaacatcactacgattacaagatcctctttcaatgattgttctaaaccttccttggatcttaattacccttcttt | 8945547 | T |
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| Q | 279 | tattgctttcttcaatggtggaaattcttcttggaggagaatacaagagttccacaaaacagtgaccaatgttgatgagg | 358 | Q |
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| T | 8945546 | tatagcttttttcaatgctggaaattcttcttcaagggccatccaagaatttcacagaacagttaccaatgttggtgagg | 8945467 | T |
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Target: chr8; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 81 - 388
Target Start/End: Original strand, 8958322 - 8958633
Alignment:
| Q | 81 | cagcaactcctcttgcattaggagctagttatgttgatactactagagcacttgaccccggtcttctttatgacgttggtgcacaagattatgttaatct | 180 | Q |
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| T | 8958322 | cagcaactccttttgcattgggagctggtcatgttaatccaaatagagcacttgaccctggtcttatttatgatgttggtgtacaagattatgttaatct | 8958421 | T |
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| Q | 181 | tctctatggacttaacttcacacagaaacatatcactagcattacaagatccac----attcattgctctaaaccttcattggatattaaccacccttct | 276 | Q |
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| T | 8958422 | tctttgtgcacttagctactcacaaaaaaacatcactgccatcacaagatcttcttcgaatgattgctctgaaccttctttggatcttaactacccttct | 8958521 | T |
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| Q | 277 | tttattgctttcttcaatggtggaaattcttcttggaggagaatacaagagttccacaaaacagtgaccaatgttgatgaggcataaacagtttatgttg | 376 | Q |
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| T | 8958522 | tttattgcattcttcgataatgggaattcttcttcaaggacaacccaagaatttcatagaacaattaccaatgttggtgagggagaaacagtttatgttt | 8958621 | T |
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| Q | 377 | ccaacattactc | 388 | Q |
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| T | 8958622 | ctagcattactc | 8958633 | T |
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Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 127 - 310
Target Start/End: Original strand, 8974778 - 8974965
Alignment:
| Q | 127 | agcacttgaccccggtcttctttatgacgttggtgcacaagattatgttaatcttctctatggacttaacttcacacagaaacatatcactagcattaca | 226 | Q |
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| T | 8974778 | agcacttaaccctggacttgtttatgatgttggtgtacaagattatgtcaatcttctttgtgcactcaacttcacacaaaaaaacatcactatcattaca | 8974877 | T |
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| Q | 227 | agatccac----attcattgctctaaaccttcattggatattaaccacccttcttttattgctttcttcaatggtggaaattcttctt | 310 | Q |
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| T | 8974878 | agatcttctactaatgattgttctaaaccttcgttggatctcaattacccttcttttattgctttcttcaatgctgcaaattcttctt | 8974965 | T |
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Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 127 - 389
Target Start/End: Original strand, 8963382 - 8963648
Alignment:
| Q | 127 | agcacttgaccccggtcttctttatgacgttggtgcacaagattatgttaatcttctctatggacttaacttcacacagaaacatatcactagcattaca | 226 | Q |
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| T | 8963382 | agcacttgaccctggtcttgtttatgatattggtgtacaagattatgttaattttctttgtgcacttaacttcacacaaaaacacattactgccataaca | 8963481 | T |
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| Q | 227 | agatccacat----tcattgctctaaaccttcattggatattaaccacccttcttttattgctttcttcaatggtggaaattcttcttggaggagaatac | 322 | Q |
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| T | 8963482 | agatcatcatccaatgattgttctaatccttccttgcatctcaactacccttcttttattgcttttttcaacgctggaaattcttctccaaggacagccc | 8963581 | T |
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| Q | 323 | aagagttccacaaaacagtgaccaatgttgatgaggcataaacagtttatgttgccaacattactcc | 389 | Q |
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| T | 8963582 | aagaatttcacaggacagttaccaatgttggtgaaggacaaacggtttatgttgctagcattactcc | 8963648 | T |
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Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 81 - 403
Target Start/End: Complemental strand, 34962531 - 34962205
Alignment:
| Q | 81 | cagcaactcctcttgcattaggagctagttatgttgatactactagagcacttgaccccggtcttctttatgacgttggtgcacaagattatgttaatct | 180 | Q |
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| T | 34962531 | cagcaacaccttttgcattgggagctggtcatgttaatcctaatagagcacttgaccctggtcttgtttatgatgttggtgtacaagattatgtgaatct | 34962432 | T |
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| Q | 181 | tctctatggacttaacttcacacagaaacatatcactagcattacaagatcc----acattcattgctctaaaccttcattggatattaaccacccttct | 276 | Q |
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| T | 34962431 | tctttgtgcacttaaatactcacaaaaaaacatcactaccatcacaagatcctcttccaatgattgttctaaaccttccttggatcttaactacccttct | 34962332 | T |
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| Q | 277 | tttattgctttcttcaatggtggaaattcttcttggaggagaatacaagagttccacaaaacagtgaccaatgttgatgaggcataaacagtttatgttg | 376 | Q |
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| T | 34962331 | tttattgcttttttcaatgatggaaattcttcttcaaggccgatacaagaatttcgtagaacagttaccaatgttggtgacggacaagcaatttatgttg | 34962232 | T |
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| Q | 377 | ccaacattactcctatcaaagggtttc | 403 | Q |
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| T | 34962231 | ctagcattgctccaattaaagggtttc | 34962205 | T |
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Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 81 - 308
Target Start/End: Complemental strand, 21686911 - 21686680
Alignment:
| Q | 81 | cagcaactcctcttgcattaggagctagttatgttgatactactagagcacttgaccccggtcttctttatgacgttggtgcacaagattatgttaatct | 180 | Q |
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| T | 21686911 | cagcaactccttttgcattgggagctggtcatattaaccctaatagagcacttgatcctggtcttgtttatgatatcggtgtacaagattatattaatct | 21686812 | T |
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| Q | 181 | tctctatggacttaacttcacacagaaacatatcactagcattacaagatccacattc----attgctctaaaccttcattggatattaaccacccttct | 276 | Q |
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| T | 21686811 | tctttgtgcacttaacttcacacaaaaaaacatcagtgccattacaagatcttctttcaatgattgctctaaaccttccttagatcttaactacccttct | 21686712 | T |
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| Q | 277 | tttattgctttcttcaatggtggaaattcttc | 308 | Q |
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| T | 21686711 | tttattgctttctccaatgctcgtaattcttc | 21686680 | T |
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