View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0946_low_5 (Length: 396)
Name: NF0946_low_5
Description: NF0946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0946_low_5 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 30 - 385
Target Start/End: Complemental strand, 4302056 - 4301701
Alignment:
| Q |
30 |
ctctaatcggagcttggattgccaatacttcaaatattctcttccaaagtcaattaatctacggtgacacaagtgcaaccgcagtttccatcaagtacat |
129 |
Q |
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| T |
4302056 |
ctctaatcggagcttggattgccaatacttcaaatattctcttccaaagtcaattaatctacggtgacacaagtgcaaccgcagtttccatcaagtacat |
4301957 |
T |
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| Q |
130 |
ttgcttattaacctgtttcctccttgctttctcatgctttattcaatcagcaagacactttgttcatgcaaactatttgataagcacaccggatagtttt |
229 |
Q |
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| T |
4301956 |
ttgcttattaacctgtttcctccttgctttctcatgctttattcaatcagcaagacactttgttcatgcaaactatttgataagcacaccggatagtttt |
4301857 |
T |
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| Q |
230 |
gttcctatcagtagtgtggaattagcagtcataaggggtggtgatttttggtcactcggtcttcgagctctttattttgcacttaacttgctgctttggt |
329 |
Q |
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| T |
4301856 |
gttcctatcagtagtgtggaattagcagtcataaggggtggtgatttttggtcactcggtcttcgagctctttattttgcacttaacttgctgctttggt |
4301757 |
T |
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| Q |
330 |
tttttggtccaatacccatgtttatttgctcattggttatggttcttgttcttcat |
385 |
Q |
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| T |
4301756 |
tttttggtccaatatccatgtttatttgctcattggttatggttcttgttcttcat |
4301701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 30 - 385
Target Start/End: Complemental strand, 33101509 - 33101154
Alignment:
| Q |
30 |
ctctaatcggagcttggattgccaatacttcaaatattctcttccaaagtcaattaatctacggtgacacaagtgcaaccgcagtttccatcaagtacat |
129 |
Q |
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| T |
33101509 |
ctctaattggagcttggattgctaatacttcaaatattttcttccagagtcaattaatctatggtgacacgagtgcaaccgcagtttccatcaagtacat |
33101410 |
T |
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| Q |
130 |
ttgcttattaacctgtttcctccttgctttctcatgctttattcaatcagcaagacactttgttcatgcaaactatttgataagcacaccggatagtttt |
229 |
Q |
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||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33101409 |
ttgtttattaacctgtttccttcttgctttctcatgctttattcaatatgcaagacgctttgttcatgcaaactatttgataagcacaccagatagtttt |
33101310 |
T |
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| Q |
230 |
gttcctatcagtagtgtggaattagcagtcataaggggtggtgatttttggtcactcggtcttcgagctctttattttgcacttaacttgctgctttggt |
329 |
Q |
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| T |
33101309 |
gttcctattagtagtgtggaattagcagtcataaggggtggtgatttttggtcactcggtcttcaagctctttaatttgcacttaacttgctgctttggt |
33101210 |
T |
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| Q |
330 |
tttttggtccaatacccatgtttatttgctcattggttatggttcttgttcttcat |
385 |
Q |
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| T |
33101209 |
tttttggtccaatacccatgtttatttgctcattggttatggttcatgttcttcat |
33101154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 42 - 385
Target Start/End: Complemental strand, 87485 - 87142
Alignment:
| Q |
42 |
cttggattgccaatacttcaaatattctcttccaaagtcaattaatctacggtgacacaagtgcaaccgcagtttccatcaagtacatttgcttattaac |
141 |
Q |
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|||||| ||| ||||||||||||||| ||||||| ||||||| |||||| |||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
87485 |
cttggactgctaatacttcaaatattttcttccagagtcaataaatctatggtgacacgagggcaaccgcagtttccatcaagtacatttgcttattaac |
87386 |
T |
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| Q |
142 |
ctgtttcctccttgctttctcatgctttattcaatcagcaagacactttgttcatgcaaactatttgataagcacaccggatagttttgttcctatcagt |
241 |
Q |
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|||| |||| |||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
87385 |
ctgtgtccttcttggtttctcatgctttattcaatctgcaagacacttttttcatgcaaactatttgataagcacaccagatagttttgttcctattagt |
87286 |
T |
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| Q |
242 |
agtgtggaattagcagtcataaggggtggtgatttttggtcactcggtcttcgagctctttattttgcacttaacttgctgctttggttttttggtccaa |
341 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| ||||| || | |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
87285 |
agtgtggaattagcagtcataagaggtggtgatttttggtcactcgatcttcaaggtatttattttgcacttaactcgctgctttggttttttggtccaa |
87186 |
T |
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| Q |
342 |
tacccatgtttatttgctcattggttatggttcttgttcttcat |
385 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
87185 |
tacccatgtttatttgctcattggttatggttcatgttcttcat |
87142 |
T |
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