View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0947_high_17 (Length: 418)
Name: NF0947_high_17
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_high_17 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 120 - 412
Target Start/End: Complemental strand, 11228568 - 11228276
Alignment:
| Q |
120 |
tccactcaacaggacccacacctggaggtggtggcttagcaagtatttcttctttagttttcttggggtagaagtatgcattccttaagctatatttata |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11228568 |
tccactcaacaggacccacacctggaggtggtggcttagcaagtatttcttctttagttttcttggggtagaagtatgtattccttaagctatatttata |
11228469 |
T |
|
| Q |
220 |
ggatctccatctatcccctagtgtactcctcacccatttgattccagcagcatagtcaaactcaaaatgtttctaaaaatgtatttaaaggtcaatattt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11228468 |
ggatctccatctatcccctagtgtactcctcacccatttgattccagcagcatagtcaaactcaaaatgtttctaaaaatgtatttaaaggtcaatattt |
11228369 |
T |
|
| Q |
320 |
tgatataaaaggcacatcaacaaacnnnnnnnnnttaacaaagtcaaaataataacctcaatacactgccattgatctatactatattcttcg |
412 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||| |
|
|
| T |
11228368 |
tgatataaaaggcacatcaacaaacaaacaaaaattaacaaagtcaaaataataacctcgatacactgccattgatctatactacatttttcg |
11228276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 11224546 - 11224422
Alignment:
| Q |
1 |
tcggtgtcaaagacatattataaggacattttagtatctttatagattctaagagaatgcttgtaaaataaatttatataccttcattttgtcaccttta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11224546 |
tcggtgtcaaagacatattataaggacattttagtatctttatagattctaagagaatgcttgtaaaataaatttctataccttcattttgtcaccttta |
11224447 |
T |
|
| Q |
101 |
tagtgatgcacaaaagcagtccact |
125 |
Q |
| |
|
|||||||||||||||| |||||||| |
|
|
| T |
11224446 |
tagtgatgcacaaaagtagtccact |
11224422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 9e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 203 - 412
Target Start/End: Complemental strand, 13552007 - 13551799
Alignment:
| Q |
203 |
cttaagctatatttataggatctccatctatcccctagtgtactcctcacccatttgattccagcagcatagtcaaactcaaaatgtttctaaaaatgta |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13552007 |
cttaagctatatttataggatctccatctatccgctagtgtactcctcacccatttgattccagcagcatagtcaaactcaaaatgtttctagaaatgta |
13551908 |
T |
|
| Q |
303 |
tttaaaggtcaatattttgatataaaaggcacatcaacaaacnnnnnnnnnttaacaaagtcaaaataataacctcaatacactgccattgatctatact |
402 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13551907 |
tttaaaggtcaatattttgatataaaaagcgcatcaacaaac-aaaaaaaattaacaaagtcaaaatataaacctcaatacactgccattgatctatact |
13551809 |
T |
|
| Q |
403 |
atattcttcg |
412 |
Q |
| |
|
| ||| |||| |
|
|
| T |
13551808 |
acatttttcg |
13551799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University