View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0947_high_25 (Length: 375)
Name: NF0947_high_25
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_high_25 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 28 - 375
Target Start/End: Complemental strand, 37216549 - 37216202
Alignment:
| Q |
28 |
gcaagatcccaatgttggaagtgcatgtattgttttttcttctgttgtgcaaaggagacttaatggggttcagtaacgatgaaaggtagtcaaggagagt |
127 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37216549 |
gcaagatcccaatgttggaagtgtgtgtattgttttttcttctgctgtgcaaaggagacttaatggggttcagtaacgatgaaaggtagtcaaggagagt |
37216450 |
T |
|
| Q |
128 |
ccagtggtgtttgtacaaccaagaaggatcatggtaggcacgagaaaattccattcaatggtctacggaaaataatgcgactctcgagtaaggatataaa |
227 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37216449 |
ccggtggtgtttgtacaaccaagaaggatcatggtaggcacgagaaaactccactcaatggtctacggaaaataatgcgactctcgagtaaggatataaa |
37216350 |
T |
|
| Q |
228 |
agttatgtttaaaacattaaagagaagtagagggaaaatgttgaaagtcgtttatgattcatctaaggctgaaggtaacaggggttcaattatcttctag |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37216349 |
agttatgtttaaaacattaaagagaagtagagggaacatgttgaaagtcgtttatgattcacctaaggctgaaggtaacaggggttcaattatcttctag |
37216250 |
T |
|
| Q |
328 |
tagttcttatttatcggttaattgtgatatgaaaattttgatggtttt |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37216249 |
tagttcttatttatcggttaattgtgatatgaaaattttgatggtttt |
37216202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University