View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0947_high_28 (Length: 358)
Name: NF0947_high_28
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 8780540 - 8780262
Alignment:
| Q |
1 |
atttttcaccattgctttatacacctctctttttacctaattattcaacaggtgttgattagaagcaaataatcaactggtttattaatcatcaaaggaa |
100 |
Q |
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| T |
8780540 |
attttgcagcattgctttataaacctctcatttcacctgattattcaacaagtcttaatcagaagcaaataaacaactggtttattaaa-atcaaagaaa |
8780442 |
T |
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| Q |
101 |
acggcactggaagctttcagaggacatgcagtttgtggtgatggatccaagtcatccacactattacatggataatgttctcaccaattcatatctcatg |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8780441 |
acggcactggaagccttcagaggacatgcagtttgtggtgatggatccaagtcatccacactattacatggataatgttctcaccaattcatatcccatg |
8780342 |
T |
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| Q |
201 |
gatctatctaacaccatgctctagttattacctcggtgcttgcttgtggtcttaaaagtctcggtgttaatgaaccctat |
280 |
Q |
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| T |
8780341 |
gatctatctaacaccatgctctagttattacctcaattcttgcttgtggtcttaaaagtcttggtgttaattaaccctat |
8780262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 45 - 280
Target Start/End: Complemental strand, 8791989 - 8791757
Alignment:
| Q |
45 |
tcaacaggtgttgattagaagcaaataatcaactggtttattaatcatcaaaggaaacggcactggaagctttcagaggacatgcagtttgtggtgatgg |
144 |
Q |
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| T |
8791989 |
tcaacaggtcttgatcagaagcaaataaacaactggtttattaatca---aaggaaacggcactggaagccttcagaggacatgcagtttgtggtgatgg |
8791893 |
T |
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| Q |
145 |
atccaagtcatccacactattacatggataatgttctcaccaattcatatctcatggatctatctaacaccatgctctagttattacctcggtgcttgct |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
8791892 |
atccaagtcatccacactattacatggataatgttctcaccaattcatatcccatggatctatctaacaccatgctctagttattacctcaattcttgct |
8791793 |
T |
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| Q |
245 |
tgtggtcttaaaagtctcggtgttaatgaaccctat |
280 |
Q |
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||||||||||||||||| |||||||| |||||||| |
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| T |
8791792 |
tgtggtcttaaaagtcttcgtgttaattaaccctat |
8791757 |
T |
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