View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0947_high_33 (Length: 348)
Name: NF0947_high_33
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_high_33 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 6 - 337
Target Start/End: Complemental strand, 37842118 - 37841787
Alignment:
| Q |
6 |
aggtttcccaactctgatggtataagtcgtgcaaatttgttccttgacagattaatgtatgtcagatttgtgcaatttcccaaactcgatggaattggcc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37842118 |
aggtttcccaactctgatggtataagtcgtgcaaatttgttccttgacagattaatgtatgtcagatttgtgcaatttcccaaactcgatggaattggcc |
37842019 |
T |
|
| Q |
106 |
cgctgatattgttcttgcttatgtccatgtatttcaggttaagattacttgcaaaatcaggaagcgacccggtgaaattattttgattgagaaacaacct |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37842018 |
cgctgatattgttcttgcttatgtccatgtatttcaggttaagattacttgcaaaatcaggaagcgacccggtgaaattattttgattgagaaacaacct |
37841919 |
T |
|
| Q |
206 |
ccttagagttgcgcatcttccaagatcagaaggtatgccaccttgtagttgattgattcccatattgagctctaacaaatgctttccaaagcaaagattg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37841918 |
ccttagagttgcgcatcttccaagatcagaaggtatgccaccttgtagttgattgattcccatattgagctctaacaaatgctttccaaagcaaagattg |
37841819 |
T |
|
| Q |
306 |
ggtgggatattgccattgaacttgttattcat |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
37841818 |
ggtgggatattgccattgaacttgttattcat |
37841787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 22 - 337
Target Start/End: Complemental strand, 37830779 - 37830464
Alignment:
| Q |
22 |
atggtataagtcgtgcaaatttgttccttgacagattaatgtatgtcagatttgtgcaatttcccaaactcgatggaattggcccgctgatattgttctt |
121 |
Q |
| |
|
||||||| |||| |||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| |||| |||||| || | |||||||| || |
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|
| T |
37830779 |
atggtatgagtcctgcaaatttgtttcttgacaaattaatgtatgcgagatttgtgcaatttcccaaacttgatgtaattggtccaccaatattgttttt |
37830680 |
T |
|
| Q |
122 |
gcttatgtccatgtatttcaggttaagattacttgcaaaatcaggaagcgacccggtgaaattattttgattgagaaacaacctccttagagttgcgcat |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
37830679 |
gcttatgtccatgtatttcaggttaagattacttgcaaaatcgggaagcaacccggtgaaattattttgattgagaaacaacctccttagagttgcacat |
37830580 |
T |
|
| Q |
222 |
cttccaagatcagaaggtatgccaccttgtagttgattgattcccatattgagctctaacaaatgctttccaaagcaaagattgggtgggatattgccat |
321 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||| |
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| T |
37830579 |
cttcctagatcagaaggtatgccaccttgtagttgattgattcccatgttgagctctaacaaatgctttccaaaacaaagatttggtgggatattaccac |
37830480 |
T |
|
| Q |
322 |
tgaacttgttattcat |
337 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
37830479 |
tgaacttgttattcat |
37830464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 6 - 337
Target Start/End: Complemental strand, 37849874 - 37849543
Alignment:
| Q |
6 |
aggtttcccaactctgatggtataagtcgtgcaaatttgttccttgacagattaatgtatgtcagatttgtgcaatttcccaaactcgatggaattggcc |
105 |
Q |
| |
|
|||||||||| || ||||||||| || |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||| | | |
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|
| T |
37849874 |
aggtttcccagctgtgatggtatgagccgtgcaaatttgttccttgacaaattaatgtatgtaagatttgtgcaatttcccaaacttgatggaatccgtc |
37849775 |
T |
|
| Q |
106 |
cgctgatattgttcttgcttatgtccatgtatttcaggttaagattacttgcaaaatcaggaagcgacccggtgaaattattttgattgagaaacaacct |
205 |
Q |
| |
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| ||||| |||||||| || |||||||||||||||||||| | ||||||| ||||||| ||||| ||||||||||||||||||| ||||||||||||||| |
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|
| T |
37849774 |
cactgattttgttcttactcatgtccatgtatttcaggttcaaattactttcaaaatcgggaagagacccggtgaaattattttcattgagaaacaacct |
37849675 |
T |
|
| Q |
206 |
ccttagagttgcgcatcttccaagatcagaaggtatgccaccttgtagttgattgattcccatattgagctctaacaaatgctttccaaagcaaagattg |
305 |
Q |
| |
|
| | |||||| | |||||||| | |||||||||||| ||||| ||||||||||||||||| || ||| ||| |||||||||||||||||||| |||| |
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|
| T |
37849674 |
catcagagtttcacatcttcctacatcagaaggtatattgccttgaagttgattgattcccatgtttagcactagcaaatgctttccaaagcaaatattg |
37849575 |
T |
|
| Q |
306 |
ggtgggatattgccattgaacttgttattcat |
337 |
Q |
| |
|
||||||||||| ||| |||||||||||||||| |
|
|
| T |
37849574 |
ggtgggatattaccactgaacttgttattcat |
37849543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 35 - 337
Target Start/End: Complemental strand, 37836470 - 37836168
Alignment:
| Q |
35 |
tgcaaatttgttccttgacagattaatgtatgtcagatttgtgcaatttcccaaactcgatggaattggcccgctgatattgttcttgcttatgtccatg |
134 |
Q |
| |
|
|||||| |||||||| |||| |||| ||||||| |||||| |||||||||||||||| ||||||| ||| || ||||||||||||||||| | ||||||| |
|
|
| T |
37836470 |
tgcaaaattgttcctcgacaaattactgtatgtgagatttttgcaatttcccaaacttgatggaactggtccactgatattgttcttgctcaagtccatg |
37836371 |
T |
|
| Q |
135 |
tatttcaggttaagattacttgcaaaatcaggaagcgacccggtgaaattattttgattgagaaacaacctccttagagttgcgcatcttccaagatcag |
234 |
Q |
| |
|
|| |||||||| | |||||| ||||||||||||| ||||||||||||||||||| ||||| || ||||||| | |||||| | |||||||| ||||||| |
|
|
| T |
37836370 |
tagttcaggttcaaattactctcaaaatcaggaagagacccggtgaaattattttcattgataatcaacctcatcagagtttcacatcttcctagatcag |
37836271 |
T |
|
| Q |
235 |
aaggtatgccaccttgtagttgattgattcccatattgagctctaacaaatgctttccaaagcaaagattgggtgggatattgccattgaacttgttatt |
334 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
37836270 |
aaggtatgccaccttgaagttgattgattcccatattgagcactgacaaatgctttccaaagcaaagattgggtgggatattaccgctgaacttgttatt |
37836171 |
T |
|
| Q |
335 |
cat |
337 |
Q |
| |
|
||| |
|
|
| T |
37836170 |
cat |
37836168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 37821583 - 37821519
Alignment:
| Q |
228 |
agatcagaaggtatgccaccttgtagttgattgattcccatattgagctctaacaaatgctttcc |
292 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37821583 |
agatcagaaggtatgccaccttgaagttgattgattcccatgttgagctctaacaaatgctttcc |
37821519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 6 - 337
Target Start/End: Complemental strand, 36865250 - 36864924
Alignment:
| Q |
6 |
aggtttcccaactctgatggtataagtcgtgcaaatttgttccttgacagattaatgtatgtcagatttgtgcaatttcccaaactcgatggaattggcc |
105 |
Q |
| |
|
|||||||||| |||| ||||||| || | |||||||||||| ||||||| |||||||||||| ||||| ||| ||||||||||||| ||||| || || | |
|
|
| T |
36865250 |
aggtttcccagctctaatggtatgagccctgcaaatttgttgcttgacaaattaatgtatgtaagattagtgtaatttcccaaacttgatggtatcggtc |
36865151 |
T |
|
| Q |
106 |
cgctgatattgttcttgcttatgtccatgtatttcaggttaagattacttgcaaaatcaggaagcgacccggtgaaattattttgattgagaaacaacct |
205 |
Q |
| |
|
| | |||| |||||||||| |||||||||||||||||||| | ||||||| ||||||| ||||| ||||||||||||||||||| ||||| |||||| |
|
|
| T |
36865150 |
caccgatactgttcttgctcatgtccatgtatttcaggttcatattactttcaaaatcgggaagagacccggtgaaattattttcattgaaaaacaa--- |
36865054 |
T |
|
| Q |
206 |
ccttagagttgcgcatcttccaagatcagaaggtatgccaccttgtagttgattgattcccatattgagctctaacaaatgctttccaaagcaaagattg |
305 |
Q |
| |
|
| |||||| | |||||||| | ||||||||| ||||||||||| |||||||| ||||| | ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36865053 |
--tcagagtttcacatcttcctatatcagaaggaatgccaccttgaagttgattaattccgacgttgaggtctaacaaatgctttccaaagcaaagattt |
36864956 |
T |
|
| Q |
306 |
ggtgggatattgccattgaacttgttattcat |
337 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| |
|
|
| T |
36864955 |
ggtgggatattaccattaaacttgttattcat |
36864924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 271
Target Start/End: Complemental strand, 45561036 - 45560834
Alignment:
| Q |
69 |
agatttgtgcaatttcccaaactcgatggaattggcccgctgatattgttcttgcttatgtccatgtatttcaggttaagattacttgcaaaatcaggaa |
168 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||| ||| |||| ||||| ||||| || |||||| || ||| || |||| || |||||||||| |
|
|
| T |
45561036 |
agatttgtgcagtttcctaaacttgatggaattgttccgttgattttgttgttgctgatctccatgaataacagattgggattggttttgaaatcaggaa |
45560937 |
T |
|
| Q |
169 |
gcgacccggtgaaattattttgattgagaaacaacctccttagagttgcgcatcttccaagatcagaaggtatgccaccttgtagttgattgattcccat |
268 |
Q |
| |
|
| | ||| || || || ||||| || |||| | ||| |||||||||| ||||||||||| |||| |||||||| |||||| ||||||||||| ||||| |
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|
| T |
45560936 |
gaggcccagtaaagttgttttgtttaagaatgacccttcttagagttgtgcatcttccaacatcaagaggtatgctaccttgaagttgattgatgcccat |
45560837 |
T |
|
| Q |
269 |
att |
271 |
Q |
| |
|
||| |
|
|
| T |
45560836 |
att |
45560834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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