View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0947_high_35 (Length: 333)
Name: NF0947_high_35
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 314
Target Start/End: Original strand, 36453092 - 36453389
Alignment:
| Q |
16 |
atgtcacattttgaagtgtgattgcaccgcaagatatttatcataaatttataacttaaaaagtgatgtgctacaacaatcaagattgtgatgtcatatt |
115 |
Q |
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| T |
36453092 |
atgtcacattttgaagtgtgattgaaccgtaagatatttatcataaatttataacttaaaaagtgatgtgctacaacaat-aagattgtgatgtcatatt |
36453190 |
T |
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| Q |
116 |
tcgattttttagcatgtacaatgctactaaatgcgattaaagtcatattggtcatatttgactgcgattttatataatatatagtaaattttgacgtggt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
36453191 |
tcgattttttagcatgtacaatgctactaaatgcgattaaagtcatattggtcatatttgactgcgattttatacaatatataataaattttgacgtggt |
36453290 |
T |
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| Q |
216 |
ctaagtttgatcacgatataaaactgtagtcataaattcacatgttatcataaccttaannnnnnnnnnnnncaattgatcaataatttattttggtgt |
314 |
Q |
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| T |
36453291 |
caaagtttgatcacgatatagaactgtagtcataaattcacatgttatcataaccttaattttttaatttttcaattgatcaataatttattttggtgt |
36453389 |
T |
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