View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0947_high_37 (Length: 325)
Name: NF0947_high_37
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_high_37 |
 | |
|
| [»] scaffold0722 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 34 - 315
Target Start/End: Original strand, 35882710 - 35882986
Alignment:
| Q |
34 |
cccggtgaaatacacgtggcaatcaaggttcttgaacatgtcagagacgttgattatgatgactctgtggctatgtttgttgacttatcgaaactgaaac |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35882710 |
cccggtgaaatacacgtggcaatcaaggttcttgaacatgtcagagacgttgattatgatgactctgtggctatgtttgttgacttatcgaaactgaaac |
35882809 |
T |
|
| Q |
134 |
atccaaacttgttgcctctttctggttactgtattgcaggtat----gtgtgtaccgtacagnnnnnnnntgattcaatgttttgaattttgatttcttt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35882810 |
atccaaacttgttgcctctttctggttactgtattgcaggtatgtatgtgtgtaccgtacagaaaaaaaatgattcaatgttttgaattttgatttcttt |
35882909 |
T |
|
| Q |
230 |
cgagtagttaccttactgcaatgcaactatcattcattaatggctagctttcacgggtttttaattttctaatgtcctattctctg |
315 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35882910 |
cgagtagttaccttac-----tgcaactatcattcattaatg----gctttcacgggtttttaattttctaatgtcctattctctg |
35882986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 34 - 315
Target Start/End: Original strand, 24456911 - 24457187
Alignment:
| Q |
34 |
cccggtgaaatacacgtggcaatcaaggttcttgaacatgtcagagacgttgattatgatgactctgtggctatgtttgttgacttatcgaaactgaaac |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24456911 |
cccggtgaaatacacgtggcaatcaaggttcttgaacatgtcagagacgttgattatgatgactctgtggctatgtttgttgacttatcgaaactgaaac |
24457010 |
T |
|
| Q |
134 |
atccaaacttgttgcctctttctggttactgtattgcaggtat----gtgtgtaccgtacagnnnnnnnntgattcaatgttttgaattttgatttcttt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24457011 |
atccaaacttgttgcctctttctggttactgtattgcaggtatgtatgtgtgtaccgtacagaaaaaaaatgattcaatgttttgaattttgatttcttt |
24457110 |
T |
|
| Q |
230 |
cgagtagttaccttactgcaatgcaactatcattcattaatggctagctttcacgggtttttaattttctaatgtcctattctctg |
315 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24457111 |
cgagtagttaccttac-----tgcaactatcattcattaatg----gctttcacgggtttttaattttctaatgtcctattctctg |
24457187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0722 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0722
Description:
Target: scaffold0722; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 175
Target Start/End: Complemental strand, 2264 - 2132
Alignment:
| Q |
44 |
tacacgtggcaatcaaggttcttgaacatgtcagagacgttgattatgatgactctgtggctatgtttg-ttgacttatcgaaactgaaacatccaaact |
142 |
Q |
| |
|
||||||||||||| |||||||||||| ||| ||||| |||||| ||||||| |||| | || |||| ||||||| || || || |||||||| || |
|
|
| T |
2264 |
tacacgtggcaattaaggttcttgaaaatgctagagaggttgatcatgatgatgctgttgatacttttgtttgacttgtctaagcttaaacatcccaatc |
2165 |
T |
|
| Q |
143 |
tgttgcctctttctggttactgtattgcaggta |
175 |
Q |
| |
|
| ||||| |||||||||||||| || ||||||| |
|
|
| T |
2164 |
ttttgccactttctggttactgcatcgcaggta |
2132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University