View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0947_high_40 (Length: 316)
Name: NF0947_high_40
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_high_40 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 21 - 298
Target Start/End: Complemental strand, 36163941 - 36163664
Alignment:
| Q |
21 |
gcatattcacatgaggttttgtctaatacgcgtaaagaaaagaatcttgcaccatgcataagcgtgtgtattttgactattggatttataagtctaatca |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36163941 |
gcatattcacatgaggttttgtctaatacgcgtaaggaaaagaatcttgcaccatgcataagcctgtgtattttgactattgaatttataagtctaatca |
36163842 |
T |
|
| Q |
121 |
tatctcatttgatctaatagtaaaaattaatttgtgtatattaaaagagttacgtcacttgtacatcgtagaatcgtcctttaaaggaaaccnnnnnnnn |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||| | |
|
|
| T |
36163841 |
tatctcatttgatctaatagtaaaaattaatttgtgtatattaaaagagttacgtcacttgtatatcgtagaatcgttcttcaaaggaaatcaaaaagag |
36163742 |
T |
|
| Q |
221 |
nnnnnttctacataagtggaagaaacaacacacaatcataatagtaataataaaaaagacaactcacaaaatttaact |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36163741 |
aaattttctacataagtggaagaaacaacacacaatcataatagtaataataaaaaagacaactcacaaaacttaact |
36163664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University