View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0947_high_43 (Length: 303)
Name: NF0947_high_43
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_high_43 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 292
Target Start/End: Original strand, 33858611 - 33858883
Alignment:
| Q |
20 |
cttgctaaatttgcaatgccaacagtgttttatttcttctttgctttcgacttggctttaatatttaattttatgctaataagcattcatatgattgagt |
119 |
Q |
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| T |
33858611 |
cttgctaaatttgcaatgccaacagtgttttatttcttctttgctttagacttggctttaatatttaattttatgctaataagcattcatatgattgagt |
33858710 |
T |
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| Q |
120 |
attgcagcctagacttgtgtcaatttcgaacttcatcgcatttgcaaatcctaaagcacctgtgtatccgcgtcttgctcatggaaaatcttggaatgaa |
219 |
Q |
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| T |
33858711 |
attgcagcctagacttgtgtcaatttcgaacttcatcgcatttgcaaatcctaaagcacctgtgtatccgcgtcttgcgcatggaaaatcttggaatgaa |
33858810 |
T |
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| Q |
220 |
gtaagtttatctagtccatttcattacacaccactagcctaacatttcctaatcatacattggttcatatcat |
292 |
Q |
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| T |
33858811 |
gtaagtttatctagtccatttcattacacaccactagcctaacatttcctaatcatacattggttcttatcat |
33858883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 105 - 292
Target Start/End: Original strand, 33873556 - 33873743
Alignment:
| Q |
105 |
ttcatatgattgagtattgcagcctagacttgtgtcaatttcgaacttcatcgcatttgcaaatcctaaagcacctgtgtatccgcgtcttgctcatgga |
204 |
Q |
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| T |
33873556 |
ttcatttgattgagcattgcagcctaagcttgttgcagtttcaaacttcatcgcatttgcaaatcctaaagcacctgtatatccacgccttgctcatgga |
33873655 |
T |
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| Q |
205 |
aaatcttggaatgaagtaagtttatctagtccatttcattacacaccactagcctaacatttcctaatcatacattggttcatatcat |
292 |
Q |
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| T |
33873656 |
aagtcttggaatgaagtaagtttatctagtctatttaattacacaatactaacctaacatttcctaattatacattggttcttatcat |
33873743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 86 - 228
Target Start/End: Original strand, 33868987 - 33869129
Alignment:
| Q |
86 |
aattttatgctaataagcattcatatgattgagtattgcagcctagacttgtgtcaatttcgaacttcatcgcatttgcaaatcctaaagcacctgtgta |
185 |
Q |
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| T |
33868987 |
aattttatgctaacaagtgttcatttgattgagcattgcagcctaagcttgtggcagtttcgaacttcatcgcatttgcaaatcctaaagcacctgtgta |
33869086 |
T |
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| Q |
186 |
tccgcgtcttgctcatggaaaatcttggaatgaagtaagttta |
228 |
Q |
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| T |
33869087 |
tccacgccttgctaatggaaagtcttggaatgaagtatgttta |
33869129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 227
Target Start/End: Original strand, 42781784 - 42781889
Alignment:
| Q |
122 |
tgcagcctagacttgtgtcaatttcgaacttcatcgcatttgcaaatcctaaagcacctgtgtatccgcgtcttgctcatggaaaatcttggaatgaagt |
221 |
Q |
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||||||||| ||||||| | |||| || ||||| ||||||| ||||||||||| ||| | ||||| || |||||||| || ||||||||| ||||||| |
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| T |
42781784 |
tgcagcctaaacttgtggcggtttccaatttcatatcatttgccaatcctaaagcgcctttatatcctcgccttgctcaagggaaatcttgggatgaagt |
42781883 |
T |
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| Q |
222 |
aagttt |
227 |
Q |
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|||||| |
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| T |
42781884 |
aagttt |
42781889 |
T |
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