View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0947_high_52 (Length: 273)
Name: NF0947_high_52
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_high_52 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 42 - 257
Target Start/End: Complemental strand, 22159154 - 22158947
Alignment:
| Q |
42 |
aagagtacatgcacatgatgttttctccatttagaccactttccaagtaacataggaggaagcaagataagtgaacacgattcaattttatgtgagatta |
141 |
Q |
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| T |
22159154 |
aagagtacatgcacatgatgttttctccatttagaccactttccaag--------gaggaagcaagataagtgaacacgattcaatttgatgtgagatta |
22159063 |
T |
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| Q |
142 |
gatctaaaatgtaagcatagtaatgtttgagataataatgaattaattatagtccacgttggacacgtgattggtgacgttgtaatggtccctttttgtt |
241 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
22159062 |
gatctcaaatgtaagcatagtaatgtttgagataataatgaattaattatagtccacgttggacatgtgattggtaacgttgtaatggtccctttttgtt |
22158963 |
T |
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| Q |
242 |
ctcttcctcatgtttc |
257 |
Q |
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|||||||||||||||| |
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| T |
22158962 |
ctcttcctcatgtttc |
22158947 |
T |
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