View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0947_high_53 (Length: 273)
Name: NF0947_high_53
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_high_53 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 53 - 244
Target Start/End: Complemental strand, 9378908 - 9378699
Alignment:
| Q |
53 |
tatgtttcttcttctcctgcttctgctgaataactactatattggctatattccatgttttctaattcaaacatcatgtgaaggagaggaatgttttttg |
152 |
Q |
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| T |
9378908 |
tatgtttcttcttctcctgcttctgctgaataactactatattggctatattccatgttttctaattcaaacatcatgtgaaggagaggaatgttttttg |
9378809 |
T |
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| Q |
153 |
aggtagagagtgtgtttgtgttt------------------gtgtctttgccttgtgatgatatgcatgtatctatatatattggctttaagttatttga |
234 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9378808 |
aggtagagagtgtgtttgtgtttgtgtttgtgtttgtgtttgtgtctttgccttgtgatgatatgcatgtatctatatatattggctttaagttatttga |
9378709 |
T |
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| Q |
235 |
gttcatatca |
244 |
Q |
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|||| ||||| |
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| T |
9378708 |
gttcttatca |
9378699 |
T |
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