View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0947_high_58 (Length: 267)
Name: NF0947_high_58
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_high_58 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 29 - 267
Target Start/End: Original strand, 6148319 - 6148554
Alignment:
| Q |
29 |
agcaacaaaaccataagaaacaatggaggaaaagttccgtgtgcctattttttggagaatagaaaaataatgaaacaatggcgatggtgaagcaatacaa |
128 |
Q |
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| T |
6148319 |
agcaacaaaaccataagaaacaatggagtaaaagatccgtgtgcctattttttggagaatagaaaaataatgaaacaatggcgatggtgaagcaatacaa |
6148418 |
T |
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| Q |
129 |
ggttgatattattaattaagatcaactgataatatttattnnnnnnnnnnnnnnntaatacatggtcatgtatttacttattctatattatcttggatta |
228 |
Q |
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| T |
6148419 |
ggttgatattattaattaagatcaactgataatatttat---aaaaaaataaaaataatacatggtcatgtatttacttattctatattatcttggatta |
6148515 |
T |
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| Q |
229 |
gatccataaattaagtgcttggcaaaataccagtcatct |
267 |
Q |
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| T |
6148516 |
gatccataaattaagtgcttggcaaaataccagtcatct |
6148554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 54 - 167
Target Start/End: Original strand, 6129278 - 6129404
Alignment:
| Q |
54 |
gaggaaaagttccgtgtgcctattttttggagaatagaaaaataatgaaacaatg-------------gcgatggtgaagcaatacaaggttgatattat |
140 |
Q |
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| T |
6129278 |
gaggaaaaaatctgtgtgcctattttttggagaatagaaaaataatgaaacattgtttagaatcactagtgatggtgaagcaacacaaggttgatatttt |
6129377 |
T |
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| Q |
141 |
taattaagatcaactgataatatttat |
167 |
Q |
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| T |
6129378 |
taattaagatcaactgataatatttat |
6129404 |
T |
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