View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0947_high_59 (Length: 260)

Name: NF0947_high_59
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0947_high_59
NF0947_high_59
[»] chr3 (7 HSPs)
chr3 (40-226)||(38142498-38142682)
chr3 (123-185)||(4821812-4821873)
chr3 (121-188)||(52496929-52496995)
chr3 (120-181)||(4396353-4396413)
chr3 (133-181)||(35499197-35499245)
chr3 (178-214)||(40956953-40956989)
chr3 (133-181)||(46934669-46934717)
[»] chr8 (9 HSPs)
chr8 (148-212)||(8981144-8981208)
chr8 (133-189)||(29777248-29777304)
chr8 (133-181)||(44099933-44099981)
chr8 (133-180)||(29617303-29617350)
chr8 (134-189)||(35580486-35580541)
chr8 (120-181)||(5333441-5333501)
chr8 (120-181)||(24099272-24099332)
chr8 (133-189)||(23851493-23851549)
chr8 (148-188)||(41060293-41060333)
[»] chr1 (6 HSPs)
chr1 (132-182)||(5324556-5324606)
chr1 (132-181)||(16262874-16262923)
chr1 (120-181)||(47132916-47132976)
chr1 (119-189)||(48750186-48750259)
chr1 (133-189)||(50148396-50148452)
chr1 (133-179)||(940378-940424)
[»] chr7 (6 HSPs)
chr7 (132-181)||(31482125-31482174)
chr7 (133-181)||(1448829-1448877)
chr7 (153-189)||(4121734-4121770)
chr7 (133-181)||(23786605-23786653)
chr7 (133-181)||(32684698-32684746)
chr7 (120-180)||(38880597-38880656)
[»] chr6 (3 HSPs)
chr6 (132-189)||(31575537-31575594)
chr6 (120-181)||(26588491-26588551)
chr6 (133-181)||(23947317-23947365)
[»] chr5 (5 HSPs)
chr5 (133-189)||(10332579-10332635)
chr5 (120-183)||(19120920-19120981)
chr5 (127-181)||(35921022-35921075)
chr5 (133-181)||(7613057-7613105)
chr5 (135-183)||(41749333-41749381)
[»] chr2 (6 HSPs)
chr2 (120-192)||(11812692-11812763)
chr2 (133-189)||(28533986-28534042)
chr2 (120-179)||(28871808-28871866)
chr2 (133-179)||(17151445-17151491)
chr2 (133-181)||(3725214-3725262)
chr2 (120-180)||(4264493-4264552)
[»] chr4 (10 HSPs)
chr4 (133-188)||(51888242-51888297)
chr4 (120-181)||(18048913-18048973)
chr4 (120-181)||(28857432-28857492)
chr4 (148-181)||(37683920-37683953)
chr4 (120-181)||(52944341-52944401)
chr4 (133-181)||(868204-868252)
chr4 (133-181)||(4643900-4643948)
chr4 (133-181)||(7393301-7393349)
chr4 (133-181)||(29965677-29965725)
chr4 (133-189)||(51318019-51318075)
[»] scaffold0445 (1 HSPs)
scaffold0445 (133-179)||(1356-1402)
[»] scaffold0426 (1 HSPs)
scaffold0426 (133-183)||(6333-6383)
[»] scaffold0015 (1 HSPs)
scaffold0015 (120-181)||(4071-4131)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 40 - 226
Target Start/End: Complemental strand, 38142682 - 38142498
Alignment:
Q  40 taatatgataagatctaaatcatcggaatactaatgnnnnnnngtatttgcgatgttgacgttcaagtcattgattcaatctgaagctgatcttttcaat 139  Q
    |||||||||||||||||||||||| |||||||||||       |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38142682 taatatgataagatctaaatcatcagaatactaatgttttt--gtatttgcaatgttgacgttcaagtcattgattcaatctgaagctgatcttttcaat 38142585  T
Q  140 aggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaatgtcgcactcagatgacaaaatgacgaaaaaacttgatcttcatg 226  Q
    || |||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38142584 agaaatcaaacgaacaccgcaaaaagacgcgatatcaaacaatgtcgcactcatatgacaaaatgacgaaaaaacttgatcttcatg 38142498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 4821873 - 4821812
Alignment:
Q  123 aagctgatcttttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaatgtc 185  Q
    |||||||||||| ||||| ||| | |||||||||||||| ||||||| |||||||||||||||    
T  4821873 aagctgatcttt-caatatgaaccaaacgaacaccgcaacaagacgcaaaatcaaacaatgtc 4821812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 52496995 - 52496929
Alignment:
Q  121 tgaagctgatcttttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaatgtcgca 188  Q
    |||||||||||||| ||||| ||||| |||||||||| ||| || ||| |||||||||||| ||||||    
T  52496995 tgaagctgatcttt-caataagaatcaaacgaacacctcaacaatacgtgaaatcaaacaacgtcgca 52496929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 4396353 - 4396413
Alignment:
Q  120 ctgaagctgatcttttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaa 181  Q
    |||||||| |||||| ||||| ||||| |||||||||||||| ||| ||| |||||||||||    
T  4396353 ctgaagcttatcttt-caatatgaatcaaacgaacaccgcaacaaggcgcaaaatcaaacaa 4396413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 35499197 - 35499245
Alignment:
Q  133 tttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaa 181  Q
    |||||||| ||||| || |||||||||| ||||||| ||||||||||||    
T  35499197 tttcaatatgaatcaaatgaacaccgcacaaagacgggaaatcaaacaa 35499245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 40956953 - 40956989
Alignment:
Q  178 acaatgtcgcactcagatgacaaaatgacgaaaaaac 214  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  40956953 acaatgccgcactcagatgacaaaatcacgaaaaaac 40956989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 46934717 - 46934669
Alignment:
Q  133 tttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaa 181  Q
    |||||||| ||||| || ||||||||||| |||||| ||||||||||||    
T  46934717 tttcaatatgaatcaaatgaacaccgcaagaagacgggaaatcaaacaa 46934669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 212
Target Start/End: Complemental strand, 8981208 - 8981144
Alignment:
Q  148 aacgaacaccgcaaaaagacgcgaaatcaaacaatgtcgcactcagatgacaaaatgacgaaaaa 212  Q
    |||||||||||||| |||||||||||||||| || | |||||||||| ||| |||| ||||||||    
T  8981208 aacgaacaccgcaacaagacgcgaaatcaaaaaacgccgcactcagacgacgaaatcacgaaaaa 8981144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 29777304 - 29777248
Alignment:
Q  133 tttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaatgtcgcac 189  Q
    |||||||||||||  || ||||||||||| |||||| |||| |||||||||||||||    
T  29777304 tttcaataggaataaaatgaacaccgcaagaagacgggaaagcaaacaatgtcgcac 29777248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 44099933 - 44099981
Alignment:
Q  133 tttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaa 181  Q
    |||||||| ||||| || |||||||||||||||||| ||||||||||||    
T  44099933 tttcaatatgaatcaaatgaacaccgcaaaaagacgggaaatcaaacaa 44099981  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 29617303 - 29617350
Alignment:
Q  133 tttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaaca 180  Q
    |||||||| ||| | |||||||||||||| ||||||||||||||||||    
T  29617303 tttcaataagaaccaaacgaacaccgcaacaagacgcgaaatcaaaca 29617350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 35580541 - 35580486
Alignment:
Q  134 ttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaatgtcgcac 189  Q
    ||||||| ||||| |||||||||||||| ||||||  ||||||||||| |||||||    
T  35580541 ttcaatatgaatcaaacgaacaccgcaagaagacggaaaatcaaacaacgtcgcac 35580486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 5333501 - 5333441
Alignment:
Q  120 ctgaagctgatcttttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaa 181  Q
    |||||| |||||||| ||||||||| | ||||||||||| || ||||||| |||||||||||    
T  5333501 ctgaagttgatcttt-caataggaaccaaacgaacaccggaacaagacgcaaaatcaaacaa 5333441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 24099272 - 24099332
Alignment:
Q  120 ctgaagctgatcttttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaa 181  Q
    ||||||||||| ||||||||| ||| | || ||||||||||| |||| ||||||||||||||    
T  24099272 ctgaagctgat-ttttcaatatgaaccaaatgaacaccgcaacaagatgcgaaatcaaacaa 24099332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 23851493 - 23851549
Alignment:
Q  133 tttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaatgtcgcac 189  Q
    |||||||| ||||| || ||||||||||  |||||| |||||||||||| |||||||    
T  23851493 tttcaatatgaatcaaatgaacaccgcacgaagacgggaaatcaaacaacgtcgcac 23851549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 41060293 - 41060333
Alignment:
Q  148 aacgaacaccgcaaaaagacgcgaaatcaaacaatgtcgca 188  Q
    |||||||||||||| |||| || ||||||||||||||||||    
T  41060293 aacgaacaccgcaacaagaagcaaaatcaaacaatgtcgca 41060333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 5324556 - 5324606
Alignment:
Q  132 ttttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaat 182  Q
    ||||||||| ||||| || |||||||||||||||||| |||||||||||||    
T  5324556 ttttcaatatgaatcaaatgaacaccgcaaaaagacgggaaatcaaacaat 5324606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 16262923 - 16262874
Alignment:
Q  132 ttttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaa 181  Q
    ||||||||| ||||| |||||||||| ||| |||||||||||||||||||    
T  16262923 ttttcaatatgaatcaaacgaacaccacaacaagacgcgaaatcaaacaa 16262874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 47132976 - 47132916
Alignment:
Q  120 ctgaagctgatcttttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaa 181  Q
    ||||||||||||||| ||||| ||| | |||||||||||||| |||||||||||| ||||||    
T  47132976 ctgaagctgatcttt-caatatgaagcaaacgaacaccgcaacaagacgcgaaattaaacaa 47132916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 48750259 - 48750186
Alignment:
Q  119 tctgaagctgatcttttcaataggaatcgaacgaacaccgca----aaaagacgcgaaatcaaacaatgtcgcac 189  Q
    |||||||||||||||| ||||| ||||| |||||||||||||    |||||| |||||||||||||| |||||||    
T  48750259 tctgaagctgatcttt-caatacgaatcaaacgaacaccgcacaacaaaagatgcgaaatcaaacaacgtcgcac 48750186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 50148452 - 50148396
Alignment:
Q  133 tttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaatgtcgcac 189  Q
    |||||||| ||||| || ||||||||||  |||||| ||||||||||||||||||||    
T  50148452 tttcaatatgaatcaaatgaacaccgcacgaagacgggaaatcaaacaatgtcgcac 50148396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 940424 - 940378
Alignment:
Q  133 tttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaac 179  Q
    |||||||||||||  |||||||||||| | |||||||||||||||||    
T  940424 tttcaataggaattaaacgaacaccgcgacaagacgcgaaatcaaac 940378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 31482125 - 31482174
Alignment:
Q  132 ttttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaa 181  Q
    |||||||||| |||| |||||||||||||| |||||| ||||||||||||    
T  31482125 ttttcaatagaaatcaaacgaacaccgcaataagacgtgaaatcaaacaa 31482174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 1448829 - 1448877
Alignment:
Q  133 tttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaa 181  Q
    |||||||| ||||| || ||||||||||| |||||| ||||||||||||    
T  1448829 tttcaatatgaatcaaatgaacaccgcaagaagacgagaaatcaaacaa 1448877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 189
Target Start/End: Original strand, 4121734 - 4121770
Alignment:
Q  153 acaccgcaaaaagacgcgaaatcaaacaatgtcgcac 189  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  4121734 acaccgcaacaagatgcgaaatcaaacaatgtcgcac 4121770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 23786653 - 23786605
Alignment:
Q  133 tttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaa 181  Q
    |||||||| ||||| || ||||||||||| |||||| ||||||||||||    
T  23786653 tttcaatatgaatcaaatgaacaccgcaagaagacgagaaatcaaacaa 23786605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 32684746 - 32684698
Alignment:
Q  133 tttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaa 181  Q
    |||||||| ||||| || |||||||||| ||||||| ||||||||||||    
T  32684746 tttcaatatgaatcaaatgaacaccgcacaaagacgggaaatcaaacaa 32684698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 38880597 - 38880656
Alignment:
Q  120 ctgaagctgatcttttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaaca 180  Q
    ||||||||||||||| ||||| ||| | |||||||||||||| |||| || ||||||||||    
T  38880597 ctgaagctgatcttt-caataagaaccaaacgaacaccgcaacaagatgcaaaatcaaaca 38880656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 31575537 - 31575594
Alignment:
Q  132 ttttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaatgtcgcac 189  Q
    |||||||||||||||  ||||||| ||||| |||||| |||||||||||| |||||||    
T  31575537 ttttcaataggaatcagacgaacatcgcaacaagacgagaaatcaaacaacgtcgcac 31575594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 26588491 - 26588551
Alignment:
Q  120 ctgaagctgatcttttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaa 181  Q
    |||||| |||||||| ||||| ||| | |||||||||||||| |||||| ||||||||||||    
T  26588491 ctgaagttgatcttt-caatatgaaccaaacgaacaccgcaacaagacgggaaatcaaacaa 26588551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 23947317 - 23947365
Alignment:
Q  133 tttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaa 181  Q
    |||||||| ||||| || |||||||||||||||| | ||||||||||||    
T  23947317 tttcaatatgaatcaaatgaacaccgcaaaaagatgggaaatcaaacaa 23947365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 10332579 - 10332635
Alignment:
Q  133 tttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaatgtcgcac 189  Q
    |||||||| ||||| ||| ||||| |||| ||||||||||||||||||||| |||||    
T  10332579 tttcaatatgaatcaaacaaacactgcaacaagacgcgaaatcaaacaatgccgcac 10332635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 19120981 - 19120920
Alignment:
Q  120 ctgaagctgatcttttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaatg 183  Q
    ||||||||||||||  ||| ||||| | ||| |||||||||| |||||||||||||||||||||    
T  19120981 ctgaagctgatctt--caaaaggaaacaaacaaacaccgcaacaagacgcgaaatcaaacaatg 19120920  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 35921022 - 35921075
Alignment:
Q  127 tgatcttttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaa 181  Q
    ||||||||| |||||||| | || ||||||||||| |||||||||||||||||||    
T  35921022 tgatctttt-aataggaaacaaatgaacaccgcaacaagacgcgaaatcaaacaa 35921075  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 7613057 - 7613105
Alignment:
Q  133 tttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaa 181  Q
    |||||||| ||||| || ||||||||||| |||||| ||||||||||||    
T  7613057 tttcaatatgaatcaaatgaacaccgcaacaagacgagaaatcaaacaa 7613105  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 41749381 - 41749333
Alignment:
Q  135 tcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaatg 183  Q
    |||||||||||| ||||||||| |||| |||| | ||||||||||||||    
T  41749381 tcaataggaatcaaacgaacactgcaacaagatgtgaaatcaaacaatg 41749333  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 11812763 - 11812692
Alignment:
Q  120 ctgaagctgatcttttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaatgtcgcactca 192  Q
    ||||||||||||||| | ||||||||| ||  |||||||||| ||||| | ||||||||||| ||||||||||    
T  11812763 ctgaagctgatcttt-ctataggaatcaaataaacaccgcaacaagacacaaaatcaaacaacgtcgcactca 11812692  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 28533986 - 28534042
Alignment:
Q  133 tttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaatgtcgcac 189  Q
    |||||||||||||| |||||||||||||| ||||   |||||||||||| |||||||    
T  28533986 tttcaataggaatcaaacgaacaccgcaacaagatttgaaatcaaacaacgtcgcac 28534042  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 28871808 - 28871866
Alignment:
Q  120 ctgaagctgatcttttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaac 179  Q
    |||||| |||||||| ||||||||| | |||||||||||| | |||||||||||||||||    
T  28871808 ctgaagttgatcttt-caataggaaccaaacgaacaccgcgacaagacgcgaaatcaaac 28871866  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 17151491 - 17151445
Alignment:
Q  133 tttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaac 179  Q
    |||||||||||||| ||||||||||| || |||| ||||||||||||    
T  17151491 tttcaataggaatcaaacgaacaccgtaacaagatgcgaaatcaaac 17151445  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 3725262 - 3725214
Alignment:
Q  133 tttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaa 181  Q
    |||||||| ||||| |||||||||| || ||||||| ||||||||||||    
T  3725262 tttcaatatgaatcaaacgaacaccacacaaagacgagaaatcaaacaa 3725214  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 4264552 - 4264493
Alignment:
Q  120 ctgaagctgatcttttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaaca 180  Q
    |||||| |||||||| ||||| ||| | || ||||||||||| ||||||||||||||||||    
T  4264552 ctgaagttgatcttt-caataagaaccaaatgaacaccgcaataagacgcgaaatcaaaca 4264493  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 51888242 - 51888297
Alignment:
Q  133 tttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaatgtcgca 188  Q
    |||||||| ||| | |||||||||||||| |||| |||||||||||||| ||||||    
T  51888242 tttcaatatgaaccaaacgaacaccgcaacaagatgcgaaatcaaacaacgtcgca 51888297  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 18048973 - 18048913
Alignment:
Q  120 ctgaagctgatcttttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaa 181  Q
    |||||||| |||||| ||||| ||||| |||||||||||||| ||| ||| |||||||||||    
T  18048973 ctgaagcttatcttt-caatatgaatcaaacgaacaccgcaacaaggcgcaaaatcaaacaa 18048913  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 28857492 - 28857432
Alignment:
Q  120 ctgaagctgatcttttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaa 181  Q
    ||||||||||||||| ||||| ||| | ||||||||||||||  ||||||| ||||||||||    
T  28857492 ctgaagctgatcttt-caatatgaaacaaacgaacaccgcaactagacgcggaatcaaacaa 28857432  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 181
Target Start/End: Complemental strand, 37683953 - 37683920
Alignment:
Q  148 aacgaacaccgcaaaaagacgcgaaatcaaacaa 181  Q
    |||||||||||||| |||||||||||||||||||    
T  37683953 aacgaacaccgcaacaagacgcgaaatcaaacaa 37683920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 52944401 - 52944341
Alignment:
Q  120 ctgaagctgatcttttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaa 181  Q
    ||||||||||||||| ||||| ||| | |||||||||||||| ||||||| |||| ||||||    
T  52944401 ctgaagctgatcttt-caatatgaaacaaacgaacaccgcaacaagacgcaaaattaaacaa 52944341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 868252 - 868204
Alignment:
Q  133 tttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaa 181  Q
    |||||||| ||||| || ||||||||||| |||||| ||||||||||||    
T  868252 tttcaatatgaatcaaatgaacaccgcaagaagacgggaaatcaaacaa 868204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 4643948 - 4643900
Alignment:
Q  133 tttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaa 181  Q
    |||||||| ||||| || |||||||||| ||||||| ||||||||||||    
T  4643948 tttcaatatgaatcaaatgaacaccgcacaaagacgggaaatcaaacaa 4643900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 7393349 - 7393301
Alignment:
Q  133 tttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaa 181  Q
    |||||||||||||| |||||||||| ||| |||| | ||||||||||||    
T  7393349 tttcaataggaatcaaacgaacaccacaacaagatgtgaaatcaaacaa 7393301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 29965725 - 29965677
Alignment:
Q  133 tttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaa 181  Q
    |||||||| ||||| || |||||||||| ||||||| ||||||||||||    
T  29965725 tttcaatatgaatcaaatgaacaccgcacaaagacgggaaatcaaacaa 29965677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 51318075 - 51318019
Alignment:
Q  133 tttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaatgtcgcac 189  Q
    |||||||| ||||| ||  |||||||||| |||||| |||||||||||||| |||||    
T  51318075 tttcaatatgaatcaaattaacaccgcaagaagacgggaaatcaaacaatgccgcac 51318019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 1402 - 1356
Alignment:
Q  133 tttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaac 179  Q
    ||||||||||||   |||||||||||||| |||||||||||||||||    
T  1402 tttcaataggaactaaacgaacaccgcaacaagacgcgaaatcaaac 1356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 6383 - 6333
Alignment:
Q  133 tttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaatg 183  Q
    |||||||| ||||| || ||||||||||| |||||| ||||||||||||||    
T  6383 tttcaatatgaatcaaatgaacaccgcaagaagacgggaaatcaaacaatg 6333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 4071 - 4131
Alignment:
Q  120 ctgaagctgatcttttcaataggaatcgaacgaacaccgcaaaaagacgcgaaatcaaacaa 181  Q
    ||||||||| ||||| ||||| ||||| |||||||||| ||| ||||| |||||||||||||    
T  4071 ctgaagctggtcttt-caatatgaatcaaacgaacaccacaataagacacgaaatcaaacaa 4131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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