View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0947_high_9 (Length: 494)
Name: NF0947_high_9
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 29 - 298
Target Start/End: Complemental strand, 41614732 - 41614474
Alignment:
| Q |
29 |
atattaaacggaaaatttaattaaataaaaagttagacacaagggatgttaacccaaacaagataaacaatgtcttaatcgacactaaccac-atacaga |
127 |
Q |
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| T |
41614732 |
atattaaacggaaaatttaattaaataaaaagttagacacaaggggtgctaacccaaacaagataaacaatgtcttaatcgacactcaccacaatacaga |
41614633 |
T |
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| Q |
128 |
aagaaatttgcaaaatcacctatgctaaagccaaaataacagccaatataataaaaagtcaggagaccaattatatgaccaattacaatataagatactg |
227 |
Q |
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| T |
41614632 |
aagaaatttgcaaaatcacctatgctaaagccaaaataacagccaatataataaaaagttagga------------gaccaattacaatataagatactg |
41614545 |
T |
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| Q |
228 |
ctaaaagctactaacaacaaacacaggaacaaacatgattccaccaagagcaaatgtttatgctatgatca |
298 |
Q |
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| T |
41614544 |
ctaaaagttactaacaacaaacacaggaacaaacatgattccaccaagagcaaatgtttatgctatgatca |
41614474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 31 - 182
Target Start/End: Complemental strand, 41621835 - 41621675
Alignment:
| Q |
31 |
attaaacggaaaatttaattaaataaaa------agttagacacaagggatgttaacccaaacaagataaacaatgtcttaatcg--acactaaccac-a |
121 |
Q |
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| T |
41621835 |
attaaacggaaaatttaat-aaataaaaggttagagttagacaaaagggatgctaacccaagcaagataaacaatgtcttaatcgacacaccaaccacaa |
41621737 |
T |
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| Q |
122 |
tacagaaagaaatttgcaaaatcacctatgctaaa-gccaaaataacagccaatataataaa |
182 |
Q |
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| T |
41621736 |
tacaaaaagaattttgcaaaatcacctattctaaaggccaaaataacagccaatgtaataaa |
41621675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 355
Target Start/End: Complemental strand, 41614449 - 41614417
Alignment:
| Q |
323 |
caatgttggttaaaggtaaaaccatttctatcc |
355 |
Q |
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| T |
41614449 |
caatgttggttaaaggtaaaaccatttctatcc |
41614417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 41621620 - 41621570
Alignment:
| Q |
220 |
agatactgctaaaagctactaacaacaaacacaggaacaaacatgattcca |
270 |
Q |
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| T |
41621620 |
agatactgctaagagctactcacaagaaacagaggaacaaacatgactcca |
41621570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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