View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0947_low_1 (Length: 987)
Name: NF0947_low_1
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 871; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 871; E-Value: 0
Query Start/End: Original strand, 83 - 977
Target Start/End: Complemental strand, 51805657 - 51804763
Alignment:
| Q |
83 |
aggtcaaattccaaaagaacttggattgttgaaaaacttgcaacagcttgaactttactataactacttccttgttggcagcatccctgaagagcttgga |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51805657 |
aggtcaaattccaaaagaacttggattgttgaaaaacttgcaacagcttgaactttactataactacttccttgttggcagcatccctgaagagcttgga |
51805558 |
T |
|
| Q |
183 |
aatttaacagaacttgtcgatttagatatgtcggtaaacaaattaactggaacaatcccttcttctgtttgtaaacttccaaagcttcaggttctccaat |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51805557 |
aatttaacagaacttgtcgatttagatatgtcggtaaacaagttaactggaacaatcccttcttctgtttgtaaacttccaaagcttcaggttctccaat |
51805458 |
T |
|
| Q |
283 |
tctacaataacagtctcacaggtgaaattccaaaatcaattgaaaactcaaaaacacttagaatattgtcactttacgacaatttcttaagtggacacgt |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51805457 |
tctacaataacagtctcacaggtgaaattccaaaatcaattgaaaactcaaaaacacttagaatattgtcactttacgacaatttcttaagtggacacgt |
51805358 |
T |
|
| Q |
383 |
tcctgcgaaactaggacaatcctccggaatggttgttcttgatttgtccgaaaacaagttgtctggccctttgccagaacatgtctgtcaaggaggtaaa |
482 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51805357 |
tcctgcgaaactaggacaatcctccggaatggttgttcttgatttgtccgaaaacaagttgtctggccctttgccagaacatgtctgtcaaggaggtaaa |
51805258 |
T |
|
| Q |
483 |
ctgttatattttcttgttttggataactttttctctggtgttataccagaaagttattcaaattgcatgtttctgttaaggtttcgtgtcagtaataacc |
582 |
Q |
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| T |
51805257 |
ctgttatattttcttgttttggataactttttctctggtgttataccagaaagttattcaaattgcatgtttctgttaaggtttcgtgtcagtaataacc |
51805158 |
T |
|
| Q |
583 |
gtttggaaggttctgttccaaaaggactcttgagtttaccacatgtttcaatcattgatttgagcagtaacaatctgactggtccgattcccgagatcaa |
682 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
51805157 |
gtttggaaggttctgttccaaaaggactcttgagtttatcacatgtttcaatcattgatttgagcagcaacaatctgaccggtccgattcccgagatcaa |
51805058 |
T |
|
| Q |
683 |
cggaaattctagaaacttgtctgagcttttccttcagaggaacaagatttcaggacaattaacaccaacaatctctagagcttataaccttgtcaaaatt |
782 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
51805057 |
cggaaattctagaaacttgtctgagcttttccttcagaggaacaagatttcaggacaaataacaccaacaatctctagtgcttataaccttgtcaaaatt |
51804958 |
T |
|
| Q |
783 |
gatttcagttataactttctttctggtccaattccttctgagattggtaaccttagaaagcttaacttgcttatgctacaagcaaacaagctgaactctt |
882 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51804957 |
gatttcagttataactttctttctggtccaattccttctgagattggtaaccttagaaagcttaacttgcttatgctacaagcaaacaagctgaactctt |
51804858 |
T |
|
| Q |
883 |
ctattcctgattcattctcttccttggaatcactcaaccttctagatctttccagtaatctcttaaccggaaacatccctgaaagcctctctgtg |
977 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51804857 |
ctattcctgattcattctcttccttggaatcactcaaccttctagatctttccagtaatctcttaaccggaaacatccctgaaagcctctctgtg |
51804763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 685 - 723
Target Start/End: Original strand, 7423196 - 7423234
Alignment:
| Q |
685 |
gaaattctagaaacttgtctgagcttttccttcagagga |
723 |
Q |
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|||||||||||||||||||||| ||||||| |||||||| |
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| T |
7423196 |
gaaattctagaaacttgtctgaacttttccatcagagga |
7423234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 4e-22; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 729 - 875
Target Start/End: Original strand, 20017733 - 20017879
Alignment:
| Q |
729 |
atttcaggacaattaacaccaacaatctctagagcttataaccttgtcaaaattgatttcagttataactttctttctggtccaattccttctgagattg |
828 |
Q |
| |
|
|||||| |||| |||| || ||||||||| ||||| || ||||||| ||||||||||||||||||| ||||| | ||||||||| ||||| | |||| |
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| T |
20017733 |
atttcaagacatataactccgacaatctcttgagctattagccttgtcgaaattgatttcagttataaatttctctatggtccaatcccttcataaattg |
20017832 |
T |
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| Q |
829 |
gtaaccttagaaagcttaacttgcttatgctacaagcaaacaagctg |
875 |
Q |
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| T |
20017833 |
gtaaccttagaaaacttaatttgcttgtgttacaagggaacaagctg |
20017879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 20017409 - 20017470
Alignment:
| Q |
85 |
gtcaaattccaaaagaacttggattgttgaaaaacttgcaacagcttgaactttactataac |
146 |
Q |
| |
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|||||||||| ||| |||||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
20017409 |
gtcaaattccttcagagcttggattgttgaaaaacttgcaacagcttgaacattgctataac |
20017470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 626
Target Start/End: Original strand, 20017589 - 20017652
Alignment:
| Q |
563 |
gtttcgtgtcagtaataaccgtttggaaggttctgttccaaaaggactcttgagtttaccacat |
626 |
Q |
| |
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||||||| ||||||| |||||||| ||||||| |||||||| ||||||| |||||||||||| |
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| T |
20017589 |
gtttcgtatcagtaacaaccgtttagaaggtttggttccaaagtgactcttaagtttaccacat |
20017652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 914 - 977
Target Start/End: Original strand, 20017900 - 20017963
Alignment:
| Q |
914 |
actcaaccttctagatctttccagtaatctcttaaccggaaacatccctgaaagcctctctgtg |
977 |
Q |
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|||||||||||| |||||||||| ||||||||||| | |||||||| |||||||||||||| |
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| T |
20017900 |
actcaaccttcttgatctttccaacaatctcttaactgagaacatccccaaaagcctctctgtg |
20017963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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