View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0947_low_11 (Length: 537)
Name: NF0947_low_11
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 30 - 448
Target Start/End: Complemental strand, 37572537 - 37572119
Alignment:
| Q |
30 |
ttagcaagacaaagaagacaaaaactaagcgagaaaacacgctgtcttcagaaactaatgccatgggacaagagaatggatcaagctactctttatgaag |
129 |
Q |
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| T |
37572537 |
ttagcaagacaaagaagacaaaaactaagcgagaaaacacgctgtcttcagaaactaatgccatgggacaagagaatggatcaagctactctttatgaag |
37572438 |
T |
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| Q |
130 |
aagcttacaaatatgttaagtttttgcaggcacagttatctgttcttcaatcaatgccttcttacggtgtcggctacggcggtggtggaactactgcttc |
229 |
Q |
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| T |
37572437 |
aagcttacaaatacgttaagtttttgcaggcacagttatctgttcttcaatcaatgccttcttacggtgtcggctacggcggtggtggaactactgcttc |
37572338 |
T |
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| Q |
230 |
tggtggtgtttttgatgacttggagaagctgaaaagaaaccaagctttgcagattctggtgaactcaccggttgcacaaacaaagctttgtgaacgaggt |
329 |
Q |
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| T |
37572337 |
tggtggtgtttttgatgacttggagaagctgaaaagaaaccaagctttgcagattctggtgaactcaccggttgcacaaacaaagctttgtgaacgaggt |
37572238 |
T |
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| Q |
330 |
tactgtgttttctccatggaacaattctctctgctgaagaaattatcagaaaaaagacaacaacaagagaatttttctgaacatggttcttcaaaaactt |
429 |
Q |
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| T |
37572237 |
tactgtgttttctccatggaacaattctctctgctgaagaaattatcagaaaaaagacaacaacaagagaatttttctgaacatggttcttcaaaaactt |
37572138 |
T |
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| Q |
430 |
tctttcactgattgattac |
448 |
Q |
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| T |
37572137 |
tctttcactgattgattac |
37572119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 507
Target Start/End: Complemental strand, 37572093 - 37572060
Alignment:
| Q |
474 |
gacaccgtttctcgtgttcgttcaagtttaaccc |
507 |
Q |
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| T |
37572093 |
gacaccgtttcttgtgttcgttcaagtttaaccc |
37572060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 232 - 395
Target Start/End: Original strand, 37221120 - 37221283
Alignment:
| Q |
232 |
gtggtgtttttgatgacttggagaagctgaaaagaaaccaagctttgcagattctggtgaactcaccggttgcacaaacaaagctttgtgaacgaggtta |
331 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| || |||||| ||||||||||||| |||||| |||||||||||||||||| | |||| |
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| T |
37221120 |
gtggtgtttttgatgacttggagaagctgaacagaaaccaagcattacagattttggtgaactcaccagttgcaaaaacaaagctttgtgaacaatgtta |
37221219 |
T |
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| Q |
332 |
ctgtgttttctccatggaacaattctctctgctgaagaaattatcagaaaaaagacaacaacaa |
395 |
Q |
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| T |
37221220 |
ttgtgttttctccatggaacaattctctttgctcagaaaattatcatagaaaagacaacaacaa |
37221283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 37221027 - 37221093
Alignment:
| Q |
30 |
ttagcaagacaaagaagacaaaaactaagcgagaaaacacgctgtcttcagaaactaatgccatggg |
96 |
Q |
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|||| |||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
37221027 |
ttagaaagacaaagaagacaaaatctaagcgagaaaacatgttgtcttcagaaactaatgccatggg |
37221093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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