View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0947_low_13 (Length: 484)

Name: NF0947_low_13
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0947_low_13
NF0947_low_13
[»] chr6 (2 HSPs)
chr6 (164-388)||(3103934-3104158)
chr6 (30-79)||(3103765-3103814)
[»] chr1 (8 HSPs)
chr1 (43-79)||(19285538-19285574)
chr1 (43-79)||(5880891-5880927)
chr1 (43-79)||(11408928-11408964)
chr1 (43-79)||(773691-773727)
chr1 (43-79)||(1580573-1580609)
chr1 (43-79)||(14594720-14594756)
chr1 (43-79)||(34555942-34555978)
chr1 (43-79)||(44922019-44922055)
[»] chr4 (2 HSPs)
chr4 (38-79)||(1363653-1363694)
chr4 (43-76)||(44182339-44182372)
[»] chr8 (8 HSPs)
chr8 (43-79)||(7019902-7019938)
chr8 (43-75)||(12838510-12838542)
chr8 (43-79)||(20285835-20285871)
chr8 (43-79)||(21072464-21072500)
chr8 (38-79)||(8514223-8514264)
chr8 (43-79)||(8515919-8515955)
chr8 (43-79)||(8517998-8518034)
chr8 (43-79)||(8519702-8519738)
[»] chr3 (7 HSPs)
chr3 (38-78)||(33712982-33713022)
chr3 (38-79)||(1149443-1149484)
chr3 (43-79)||(7777518-7777554)
chr3 (51-79)||(21495505-21495533)
chr3 (43-79)||(27398128-27398164)
chr3 (43-79)||(43566725-43566761)
chr3 (43-79)||(49758489-49758525)
[»] chr2 (4 HSPs)
chr2 (43-79)||(19063811-19063847)
chr2 (43-79)||(9415134-9415170)
chr2 (43-79)||(16039299-16039335)
chr2 (47-79)||(40497678-40497710)
[»] scaffold0196 (1 HSPs)
scaffold0196 (38-79)||(9277-9318)
[»] chr7 (2 HSPs)
chr7 (38-75)||(45001026-45001063)
chr7 (43-79)||(19396974-19397010)
[»] chr5 (6 HSPs)
chr5 (197-230)||(31331203-31331236)
chr5 (43-79)||(17014008-17014044)
chr5 (35-79)||(17261057-17261101)
chr5 (43-79)||(23270409-23270445)
chr5 (43-79)||(30735954-30735990)
chr5 (198-230)||(31379986-31380018)


Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 164 - 388
Target Start/End: Original strand, 3103934 - 3104158
Alignment:
Q  164 aagagaaaaaattcagcacaaaacagctcaaaagttattttctttatagatagtatagataatagaaacaatttgatcttttttccctcnnnnnnnncaa 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||    
T  3103934 aagagaaaaaattcagcacaaaacagctcaaaagttattttctttatagatagtatagataatagaaacaatttgatcttttttccctcaaaaaacacaa 3104033  T
Q  264 attgatctttttagttgctattttacgaaaattttggataagggaagtttttgcttctctttaatagttggccacttatattatatatttaaatagcttt 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||| |||    
T  3104034 attgatctttttagttgctattttacgaaaattttggataagggaagtttctgctcctcattaatagttggccacttatattatatatttaaatagattt 3104133  T
Q  364 gttccctctcattcacgatctataa 388  Q
    |||||||||||||||||||||||||    
T  3104134 gttccctctcattcacgatctataa 3104158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 3103765 - 3103814
Alignment:
Q  30 ccaacaatataacaaagtaaatatagatacactcatctagtttgttacac 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3103765 ccaacaatataacaaagtaaatatagatacactcatctagtttgttacac 3103814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 19285538 - 19285574
Alignment:
Q  43 aaagtaaatatagatacactcatctagtttgttacac 79  Q
    |||||||||||||||||||||||||||||||||||||    
T  19285538 aaagtaaatatagatacactcatctagtttgttacac 19285574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 5880891 - 5880927
Alignment:
Q  43 aaagtaaatatagatacactcatctagtttgttacac 79  Q
    |||||||||||||||||| ||||||||||||||||||    
T  5880891 aaagtaaatatagatacagtcatctagtttgttacac 5880927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 11408964 - 11408928
Alignment:
Q  43 aaagtaaatatagatacactcatctagtttgttacac 79  Q
    ||||||| |||||||||||||||||||||||||||||    
T  11408964 aaagtaattatagatacactcatctagtttgttacac 11408928  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 773727 - 773691
Alignment:
Q  43 aaagtaaatatagatacactcatctagtttgttacac 79  Q
    ||||||| || ||||||||||||||||||||||||||    
T  773727 aaagtaagtacagatacactcatctagtttgttacac 773691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 1580609 - 1580573
Alignment:
Q  43 aaagtaaatatagatacactcatctagtttgttacac 79  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  1580609 aaagtaagtatagatacactcgtctagtttgttacac 1580573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 14594720 - 14594756
Alignment:
Q  43 aaagtaaatatagatacactcatctagtttgttacac 79  Q
    |||||||||||||||| |||||| |||||||||||||    
T  14594720 aaagtaaatatagatatactcatttagtttgttacac 14594756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 34555978 - 34555942
Alignment:
Q  43 aaagtaaatatagatacactcatctagtttgttacac 79  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  34555978 aaagtaattatagatatactcatctagtttgttacac 34555942  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 44922019 - 44922055
Alignment:
Q  43 aaagtaaatatagatacactcatctagtttgttacac 79  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  44922019 aaagtaagtatagatacactcatttagtttgttacac 44922055  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 1363694 - 1363653
Alignment:
Q  38 ataacaaagtaaatatagatacactcatctagtttgttacac 79  Q
    |||| ||||||||||||||||||||||| |||||||||||||    
T  1363694 ataaaaaagtaaatatagatacactcatgtagtttgttacac 1363653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 44182339 - 44182372
Alignment:
Q  43 aaagtaaatatagatacactcatctagtttgtta 76  Q
    |||||||||||| |||||||||||||||||||||    
T  44182339 aaagtaaatataaatacactcatctagtttgtta 44182372  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 7019938 - 7019902
Alignment:
Q  43 aaagtaaatatagatacactcatctagtttgttacac 79  Q
    |||||||||||||||||| ||||||||||||||||||    
T  7019938 aaagtaaatatagatacaatcatctagtttgttacac 7019902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 12838542 - 12838510
Alignment:
Q  43 aaagtaaatatagatacactcatctagtttgtt 75  Q
    |||||||||||||||||||||||||||||||||    
T  12838542 aaagtaaatatagatacactcatctagtttgtt 12838510  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 20285835 - 20285871
Alignment:
Q  43 aaagtaaatatagatacactcatctagtttgttacac 79  Q
    |||||||||||||||||||||||||||||| ||||||    
T  20285835 aaagtaaatatagatacactcatctagtttattacac 20285871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 21072464 - 21072500
Alignment:
Q  43 aaagtaaatatagatacactcatctagtttgttacac 79  Q
    |||||||||||||||||||||||||||||| ||||||    
T  21072464 aaagtaaatatagatacactcatctagtttattacac 21072500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 8514223 - 8514264
Alignment:
Q  38 ataacaaagtaaatatagatacactcatctagtttgttacac 79  Q
    |||| ||||||| |||||| ||||||||||||||||||||||    
T  8514223 ataaaaaagtaagtatagacacactcatctagtttgttacac 8514264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 8515919 - 8515955
Alignment:
Q  43 aaagtaaatatagatacactcatctagtttgttacac 79  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  8515919 aaagtaagtatagacacactcatctagtttgttacac 8515955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 8517998 - 8518034
Alignment:
Q  43 aaagtaaatatagatacactcatctagtttgttacac 79  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  8517998 aaagtaagtatagacacactcatctagtttgttacac 8518034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 8519702 - 8519738
Alignment:
Q  43 aaagtaaatatagatacactcatctagtttgttacac 79  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  8519702 aaagtaagtatagacacactcatctagtttgttacac 8519738  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 33713022 - 33712982
Alignment:
Q  38 ataacaaagtaaatatagatacactcatctagtttgttaca 78  Q
    |||| |||||||||||| |||||||||||||||||||||||    
T  33713022 ataaaaaagtaaatataaatacactcatctagtttgttaca 33712982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 1149443 - 1149484
Alignment:
Q  38 ataacaaagtaaatatagatacactcatctagtttgttacac 79  Q
    |||| ||||||| |||| ||||||||||||||||||||||||    
T  1149443 ataaaaaagtaagtataaatacactcatctagtttgttacac 1149484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 7777554 - 7777518
Alignment:
Q  43 aaagtaaatatagatacactcatctagtttgttacac 79  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  7777554 aaagtaaatataaatatactcatctagtttgttacac 7777518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 79
Target Start/End: Complemental strand, 21495533 - 21495505
Alignment:
Q  51 tatagatacactcatctagtttgttacac 79  Q
    |||||||||||||||||||||||||||||    
T  21495533 tatagatacactcatctagtttgttacac 21495505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 27398164 - 27398128
Alignment:
Q  43 aaagtaaatatagatacactcatctagtttgttacac 79  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  27398164 aaagtaaatatagatacacttatctattttgttacac 27398128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 43566725 - 43566761
Alignment:
Q  43 aaagtaaatatagatacactcatctagtttgttacac 79  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  43566725 aaagtaagtatagacacactcatctagtttgttacac 43566761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 49758489 - 49758525
Alignment:
Q  43 aaagtaaatatagatacactcatctagtttgttacac 79  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  49758489 aaagtaagtatagatatactcatctagtttgttacac 49758525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 19063847 - 19063811
Alignment:
Q  43 aaagtaaatatagatacactcatctagtttgttacac 79  Q
    |||||||||||| ||||||||||||||||||||||||    
T  19063847 aaagtaaatatatatacactcatctagtttgttacac 19063811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 9415134 - 9415170
Alignment:
Q  43 aaagtaaatatagatacactcatctagtttgttacac 79  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  9415134 aaagtaagtatagatacactcatttagtttgttacac 9415170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 16039335 - 16039299
Alignment:
Q  43 aaagtaaatatagatacactcatctagtttgttacac 79  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  16039335 aaagtaaatataaatatactcatctagtttgttacac 16039299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 40497678 - 40497710
Alignment:
Q  47 taaatatagatacactcatctagtttgttacac 79  Q
    |||||||||||||||||||||| ||||||||||    
T  40497678 taaatatagatacactcatctaatttgttacac 40497710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 9277 - 9318
Alignment:
Q  38 ataacaaagtaaatatagatacactcatctagtttgttacac 79  Q
    |||| ||| ||| |||||||||||||||||||||||||||||    
T  9277 ataaaaaaataagtatagatacactcatctagtttgttacac 9318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 45001026 - 45001063
Alignment:
Q  38 ataacaaagtaaatatagatacactcatctagtttgtt 75  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  45001026 ataaaaaagtaagtatagatacactcatctagtttgtt 45001063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 19397010 - 19396974
Alignment:
Q  43 aaagtaaatatagatacactcatctagtttgttacac 79  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  19397010 aaagtaagtatagatacactcatatagtttgttacac 19396974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 230
Target Start/End: Original strand, 31331203 - 31331236
Alignment:
Q  197 gttattttctttatagatagtatagataatagaa 230  Q
    ||||||||||||||| ||||||||||||||||||    
T  31331203 gttattttctttatatatagtatagataatagaa 31331236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 17014044 - 17014008
Alignment:
Q  43 aaagtaaatatagatacactcatctagtttgttacac 79  Q
    ||||||||||||||||||||||| || ||||||||||    
T  17014044 aaagtaaatatagatacactcatttaatttgttacac 17014008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 17261057 - 17261101
Alignment:
Q  35 aatataacaaagtaaatatagatacactcatctagtttgttacac 79  Q
    ||||| ||||||||| |||| ||| ||||||||||||||||||||    
T  17261057 aatatgacaaagtaagtataaatatactcatctagtttgttacac 17261101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 23270445 - 23270409
Alignment:
Q  43 aaagtaaatatagatacactcatctagtttgttacac 79  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  23270445 aaagtaagtatagatacaatcatctagtttgttacac 23270409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 30735954 - 30735990
Alignment:
Q  43 aaagtaaatatagatacactcatctagtttgttacac 79  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  30735954 aaagtaagtatagatacactcttctagtttgttacac 30735990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 230
Target Start/End: Original strand, 31379986 - 31380018
Alignment:
Q  198 ttattttctttatagatagtatagataatagaa 230  Q
    |||||||||||||| ||||||||||||||||||    
T  31379986 ttattttctttatatatagtatagataatagaa 31380018  T

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